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C2orf47 (chromosome 2 open reading frame 47)

Identity

Other alias-
HGNC (Hugo) C2orf47
LocusID (NCBI) 79568
Atlas_Id 61153
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 200820040 and ends at 200828847 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf47   26198
Cards
Entrez_Gene (NCBI)C2orf47  79568  chromosome 2 open reading frame 47
Aliases
GeneCards (Weizmann)C2orf47
Ensembl hg19 (Hinxton)ENSG00000162972 [Gene_View]  chr2:200820040-200828847 [Contig_View]  C2orf47 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162972 [Gene_View]  chr2:200820040-200828847 [Contig_View]  C2orf47 [Vega]
ICGC DataPortalENSG00000162972
TCGA cBioPortalC2orf47
AceView (NCBI)C2orf47
Genatlas (Paris)C2orf47
WikiGenes79568
SOURCE (Princeton)C2orf47
Genetics Home Reference (NIH)C2orf47
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf47  -     chr2:200820040-200828847 +  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf47  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblC2orf47 - 2q33.1 [CytoView hg19]  C2orf47 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIC2orf47 [Mapview hg19]  C2orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026208 AL832964 BC017959 BQ448209 HQ447647
RefSeq transcript (Entrez)NM_024520
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)C2orf47
Cluster EST : UnigeneHs.154494 [ NCBI ]
CGAP (NCI)Hs.154494
Alternative Splicing GalleryENSG00000162972
Gene ExpressionC2orf47 [ NCBI-GEO ]   C2orf47 [ EBI - ARRAY_EXPRESS ]   C2orf47 [ SEEK ]   C2orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79568
GTEX Portal (Tissue expression)C2orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWC4
Splice isoforms : SwissVarQ8WWC4
PhosPhoSitePlusQ8WWC4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf47
DMDM Disease mutations79568
Blocks (Seattle)C2orf47
SuperfamilyQ8WWC4
Human Protein AtlasENSG00000162972
Peptide AtlasQ8WWC4
HPRD07994
IPIIPI00291751   IPI00927477   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWC4
IntAct (EBI)Q8WWC4
FunCoupENSG00000162972
BioGRIDC2orf47
STRING (EMBL)C2orf47
ZODIACC2orf47
Ontologies - Pathways
QuickGOQ8WWC4
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC2orf47
Atlas of Cancer Signalling NetworkC2orf47
Wikipedia pathwaysC2orf47
Orthology - Evolution
OrthoDB79568
GeneTree (enSembl)ENSG00000162972
Phylogenetic Trees/Animal Genes : TreeFamC2orf47
HOVERGENQ8WWC4
HOGENOMQ8WWC4
Homologs : HomoloGeneC2orf47
Homology/Alignments : Family Browser (UCSC)C2orf47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf47
dbVarC2orf47
ClinVarC2orf47
1000_GenomesC2orf47 
Exome Variant ServerC2orf47
ExAC (Exome Aggregation Consortium)C2orf47 (select the gene name)
Genetic variants : HAPMAP79568
Genomic Variants (DGV)C2orf47 [DGVbeta]
DECIPHER (Syndromes)2:200820040-200828847  ENSG00000162972
CONAN: Copy Number AnalysisC2orf47 
Mutations
ICGC Data PortalC2orf47 
TCGA Data PortalC2orf47 
Broad Tumor PortalC2orf47
OASIS PortalC2orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C2orf47
DgiDB (Drug Gene Interaction Database)C2orf47
DoCM (Curated mutations)C2orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf47 (select a term)
intoGenC2orf47
Cancer3DC2orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf47
Genetic Testing Registry C2orf47
NextProtQ8WWC4 [Medical]
TSGene79568
GENETestsC2orf47
Huge Navigator C2orf47 [HugePedia]
snp3D : Map Gene to Disease79568
BioCentury BCIQC2orf47
ClinGenC2orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79568
Chemical/Pharm GKB GenePA162379149
Clinical trialC2orf47
Miscellaneous
canSAR (ICR)C2orf47 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf47
EVEXC2orf47
GoPubMedC2orf47
iHOPC2orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:14 CET 2017

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