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C2orf49 (chromosome 2 open reading frame 49)

Identity

Alias_symbol (synonym)MGC5509
asw
Other alias
HGNC (Hugo) C2orf49
LocusID (NCBI) 79074
Atlas_Id 61154
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 105953816 and ends at 105965271 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf49   28772
Cards
Entrez_Gene (NCBI)C2orf49  79074  chromosome 2 open reading frame 49
Aliasesasw
GeneCards (Weizmann)C2orf49
Ensembl hg19 (Hinxton)ENSG00000135974 [Gene_View]  chr2:105953816-105965271 [Contig_View]  C2orf49 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135974 [Gene_View]  chr2:105953816-105965271 [Contig_View]  C2orf49 [Vega]
ICGC DataPortalENSG00000135974
TCGA cBioPortalC2orf49
AceView (NCBI)C2orf49
Genatlas (Paris)C2orf49
WikiGenes79074
SOURCE (Princeton)C2orf49
Genetics Home Reference (NIH)C2orf49
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf49  -     chr2:105953816-105965271 +  2q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf49  -     2q12.1   [Description]    (hg38-Dec_2013)
EnsemblC2orf49 - 2q12.1 [CytoView hg19]  C2orf49 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBIC2orf49 [Mapview hg19]  C2orf49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127661 AK304268 AK307891 BC001310 BQ003369
RefSeq transcript (Entrez)NM_001286537 NM_024093
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)C2orf49
Cluster EST : UnigeneHs.549577 [ NCBI ]
CGAP (NCI)Hs.549577
Alternative Splicing GalleryENSG00000135974
Gene ExpressionC2orf49 [ NCBI-GEO ]   C2orf49 [ EBI - ARRAY_EXPRESS ]   C2orf49 [ SEEK ]   C2orf49 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79074
GTEX Portal (Tissue expression)C2orf49
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVC5
Splice isoforms : SwissVarQ9BVC5
PhosPhoSitePlusQ9BVC5
Domains : Interpro (EBI)Ashwin   
Domain families : Pfam (Sanger)Ashwin (PF15323)   
Domain families : Pfam (NCBI)pfam15323   
Conserved Domain (NCBI)C2orf49
DMDM Disease mutations79074
Blocks (Seattle)C2orf49
SuperfamilyQ9BVC5
Human Protein AtlasENSG00000135974
Peptide AtlasQ9BVC5
HPRD14688
IPIIPI00031698   IPI00909647   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVC5
IntAct (EBI)Q9BVC5
FunCoupENSG00000135974
BioGRIDC2orf49
STRING (EMBL)C2orf49
ZODIACC2orf49
Ontologies - Pathways
QuickGOQ9BVC5
Ontology : AmiGOmolecular_function  biological_process  embryonic morphogenesis  tRNA-splicing ligase complex  
Ontology : EGO-EBImolecular_function  biological_process  embryonic morphogenesis  tRNA-splicing ligase complex  
NDEx NetworkC2orf49
Atlas of Cancer Signalling NetworkC2orf49
Wikipedia pathwaysC2orf49
Orthology - Evolution
OrthoDB79074
GeneTree (enSembl)ENSG00000135974
Phylogenetic Trees/Animal Genes : TreeFamC2orf49
HOVERGENQ9BVC5
HOGENOMQ9BVC5
Homologs : HomoloGeneC2orf49
Homology/Alignments : Family Browser (UCSC)C2orf49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf49
dbVarC2orf49
ClinVarC2orf49
1000_GenomesC2orf49 
Exome Variant ServerC2orf49
ExAC (Exome Aggregation Consortium)C2orf49 (select the gene name)
Genetic variants : HAPMAP79074
Genomic Variants (DGV)C2orf49 [DGVbeta]
DECIPHER (Syndromes)2:105953816-105965271  ENSG00000135974
CONAN: Copy Number AnalysisC2orf49 
Mutations
ICGC Data PortalC2orf49 
TCGA Data PortalC2orf49 
Broad Tumor PortalC2orf49
OASIS PortalC2orf49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf49
DgiDB (Drug Gene Interaction Database)C2orf49
DoCM (Curated mutations)C2orf49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf49 (select a term)
intoGenC2orf49
Cancer3DC2orf49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf49
Genetic Testing Registry C2orf49
NextProtQ9BVC5 [Medical]
TSGene79074
GENETestsC2orf49
Huge Navigator C2orf49 [HugePedia]
snp3D : Map Gene to Disease79074
BioCentury BCIQC2orf49
ClinGenC2orf49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79074
Chemical/Pharm GKB GenePA162379179
Clinical trialC2orf49
Miscellaneous
canSAR (ICR)C2orf49 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf49
EVEXC2orf49
GoPubMedC2orf49
iHOPC2orf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:14 CET 2017

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