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C2orf50 (chromosome 2 open reading frame 50)

Identity

Alias_symbol (synonym)FLJ25143
Other alias-
HGNC (Hugo) C2orf50
LocusID (NCBI) 130813
Atlas_Id 61155
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 11273179 and ends at 11286916 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf50   26324
Cards
Entrez_Gene (NCBI)C2orf50  130813  chromosome 2 open reading frame 50
Aliases
GeneCards (Weizmann)C2orf50
Ensembl hg19 (Hinxton)ENSG00000150873 [Gene_View]  chr2:11273179-11286916 [Contig_View]  C2orf50 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150873 [Gene_View]  chr2:11273179-11286916 [Contig_View]  C2orf50 [Vega]
ICGC DataPortalENSG00000150873
TCGA cBioPortalC2orf50
AceView (NCBI)C2orf50
Genatlas (Paris)C2orf50
WikiGenes130813
SOURCE (Princeton)C2orf50
Genetics Home Reference (NIH)C2orf50
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf50  -     chr2:11273179-11286916 +  2p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf50  -     2p25.1   [Description]    (hg38-Dec_2013)
EnsemblC2orf50 - 2p25.1 [CytoView hg19]  C2orf50 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBIC2orf50 [Mapview hg19]  C2orf50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057872 AK292828 BC120930
RefSeq transcript (Entrez)NM_182500
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NW_004929298
Consensus coding sequences : CCDS (NCBI)C2orf50
Cluster EST : UnigeneHs.406894 [ NCBI ]
CGAP (NCI)Hs.406894
Alternative Splicing GalleryENSG00000150873
Gene ExpressionC2orf50 [ NCBI-GEO ]   C2orf50 [ EBI - ARRAY_EXPRESS ]   C2orf50 [ SEEK ]   C2orf50 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130813
GTEX Portal (Tissue expression)C2orf50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LR7
Splice isoforms : SwissVarQ96LR7
PhosPhoSitePlusQ96LR7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf50
DMDM Disease mutations130813
Blocks (Seattle)C2orf50
SuperfamilyQ96LR7
Human Protein AtlasENSG00000150873
Peptide AtlasQ96LR7
HPRD08051
IPIIPI00065191   
Protein Interaction databases
DIP (DOE-UCLA)Q96LR7
IntAct (EBI)Q96LR7
FunCoupENSG00000150873
BioGRIDC2orf50
STRING (EMBL)C2orf50
ZODIACC2orf50
Ontologies - Pathways
QuickGOQ96LR7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC2orf50
Atlas of Cancer Signalling NetworkC2orf50
Wikipedia pathwaysC2orf50
Orthology - Evolution
OrthoDB130813
GeneTree (enSembl)ENSG00000150873
Phylogenetic Trees/Animal Genes : TreeFamC2orf50
HOVERGENQ96LR7
HOGENOMQ96LR7
Homologs : HomoloGeneC2orf50
Homology/Alignments : Family Browser (UCSC)C2orf50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf50
dbVarC2orf50
ClinVarC2orf50
1000_GenomesC2orf50 
Exome Variant ServerC2orf50
ExAC (Exome Aggregation Consortium)C2orf50 (select the gene name)
Genetic variants : HAPMAP130813
Genomic Variants (DGV)C2orf50 [DGVbeta]
DECIPHER (Syndromes)2:11273179-11286916  ENSG00000150873
CONAN: Copy Number AnalysisC2orf50 
Mutations
ICGC Data PortalC2orf50 
TCGA Data PortalC2orf50 
Broad Tumor PortalC2orf50
OASIS PortalC2orf50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf50
DgiDB (Drug Gene Interaction Database)C2orf50
DoCM (Curated mutations)C2orf50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf50 (select a term)
intoGenC2orf50
Cancer3DC2orf50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf50
Genetic Testing Registry C2orf50
NextProtQ96LR7 [Medical]
TSGene130813
GENETestsC2orf50
Huge Navigator C2orf50 [HugePedia]
snp3D : Map Gene to Disease130813
BioCentury BCIQC2orf50
ClinGenC2orf50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130813
Chemical/Pharm GKB GenePA162379180
Clinical trialC2orf50
Miscellaneous
canSAR (ICR)C2orf50 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf50
EVEXC2orf50
GoPubMedC2orf50
iHOPC2orf50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:14 CET 2017

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