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C2orf57 (chromosome 2 open reading frame 57)

Identity

Alias_symbol (synonym)MGC35154
Other alias-
HGNC (Hugo) C2orf57
LocusID (NCBI) 165100
Atlas_Id 61157
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232457575 and ends at 232458994 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C2orf57 (2q37.1) / GABARAP (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf57   28563
Cards
Entrez_Gene (NCBI)C2orf57  165100  chromosome 2 open reading frame 57
Aliases
GeneCards (Weizmann)C2orf57
Ensembl hg19 (Hinxton)ENSG00000177673 [Gene_View]  chr2:232457575-232458994 [Contig_View]  C2orf57 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177673 [Gene_View]  chr2:232457575-232458994 [Contig_View]  C2orf57 [Vega]
ICGC DataPortalENSG00000177673
TCGA cBioPortalC2orf57
AceView (NCBI)C2orf57
Genatlas (Paris)C2orf57
WikiGenes165100
SOURCE (Princeton)C2orf57
Genetics Home Reference (NIH)C2orf57
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf57  -     chr2:232457575-232458994 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf57  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblC2orf57 - 2q37.1 [CytoView hg19]  C2orf57 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIC2orf57 [Mapview hg19]  C2orf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034405 BC063389 DQ891288 DQ894472
RefSeq transcript (Entrez)NM_152614
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)C2orf57
Cluster EST : UnigeneHs.98104 [ NCBI ]
CGAP (NCI)Hs.98104
Alternative Splicing GalleryENSG00000177673
Gene ExpressionC2orf57 [ NCBI-GEO ]   C2orf57 [ EBI - ARRAY_EXPRESS ]   C2orf57 [ SEEK ]   C2orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165100
GTEX Portal (Tissue expression)C2orf57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53QW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53QW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53QW1
Splice isoforms : SwissVarQ53QW1
PhosPhoSitePlusQ53QW1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf57
DMDM Disease mutations165100
Blocks (Seattle)C2orf57
SuperfamilyQ53QW1
Human Protein AtlasENSG00000177673
Peptide AtlasQ53QW1
HPRD14602
IPIIPI00166692   
Protein Interaction databases
DIP (DOE-UCLA)Q53QW1
IntAct (EBI)Q53QW1
FunCoupENSG00000177673
BioGRIDC2orf57
STRING (EMBL)C2orf57
ZODIACC2orf57
Ontologies - Pathways
QuickGOQ53QW1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC2orf57
Atlas of Cancer Signalling NetworkC2orf57
Wikipedia pathwaysC2orf57
Orthology - Evolution
OrthoDB165100
GeneTree (enSembl)ENSG00000177673
Phylogenetic Trees/Animal Genes : TreeFamC2orf57
HOVERGENQ53QW1
HOGENOMQ53QW1
Homologs : HomoloGeneC2orf57
Homology/Alignments : Family Browser (UCSC)C2orf57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf57
dbVarC2orf57
ClinVarC2orf57
1000_GenomesC2orf57 
Exome Variant ServerC2orf57
ExAC (Exome Aggregation Consortium)C2orf57 (select the gene name)
Genetic variants : HAPMAP165100
Genomic Variants (DGV)C2orf57 [DGVbeta]
DECIPHER (Syndromes)2:232457575-232458994  ENSG00000177673
CONAN: Copy Number AnalysisC2orf57 
Mutations
ICGC Data PortalC2orf57 
TCGA Data PortalC2orf57 
Broad Tumor PortalC2orf57
OASIS PortalC2orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf57
DgiDB (Drug Gene Interaction Database)C2orf57
DoCM (Curated mutations)C2orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf57 (select a term)
intoGenC2orf57
Cancer3DC2orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf57
Genetic Testing Registry C2orf57
NextProtQ53QW1 [Medical]
TSGene165100
GENETestsC2orf57
Huge Navigator C2orf57 [HugePedia]
snp3D : Map Gene to Disease165100
BioCentury BCIQC2orf57
ClinGenC2orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165100
Chemical/Pharm GKB GenePA162379291
Clinical trialC2orf57
Miscellaneous
canSAR (ICR)C2orf57 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf57
EVEXC2orf57
GoPubMedC2orf57
iHOPC2orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:15 CET 2017

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