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C2orf61 (chromosome 2 open reading frame 61)

Identity

Alias_symbol (synonym)FLJ40172
Other alias-
HGNC (Hugo) C2orf61
LocusID (NCBI) 285051
Atlas_Id 61158
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 47314130 and ends at 47382517 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C2orf61 (2p21) / ALK (2p23.2)C2orf61 (2p21) / CABIN1 (22q11.23)C2orf61 (2p21) / GDI2 (10p15.1)
C2orf61 (2p21) / HIST1H2BC (6p22.2)C2orf61 (2p21) / LOC642776 ()C2orf61 (2p21) / MCF2L2 (3q27.1)
C2orf61 (2p21) / SECISBP2L (15q21.1)C2orf61 (2p21) / UCP2 (11q13.4)ESD (13q14.2) / C2orf61 (2p21)
SAFB (19p13.3) / C2orf61 (2p21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf61   26850
Cards
Entrez_Gene (NCBI)C2orf61  285051  chromosome 2 open reading frame 61
Aliases
GeneCards (Weizmann)C2orf61
Ensembl hg19 (Hinxton)ENSG00000239605 [Gene_View]  chr2:47314130-47382517 [Contig_View]  C2orf61 [Vega]
Ensembl hg38 (Hinxton)ENSG00000239605 [Gene_View]  chr2:47314130-47382517 [Contig_View]  C2orf61 [Vega]
ICGC DataPortalENSG00000239605
TCGA cBioPortalC2orf61
AceView (NCBI)C2orf61
Genatlas (Paris)C2orf61
WikiGenes285051
SOURCE (Princeton)C2orf61
Genetics Home Reference (NIH)C2orf61
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf61  -     chr2:47314130-47382517 -  2p21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf61  -     2p21   [Description]    (hg38-Dec_2013)
EnsemblC2orf61 - 2p21 [CytoView hg19]  C2orf61 - 2p21 [CytoView hg38]
Mapping of homologs : NCBIC2orf61 [Mapview hg19]  C2orf61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097491 BC172329 DA313162
RefSeq transcript (Entrez)NM_001163561 NM_173649
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)C2orf61
Cluster EST : UnigeneHs.531575 [ NCBI ]
CGAP (NCI)Hs.531575
Alternative Splicing GalleryENSG00000239605
Gene ExpressionC2orf61 [ NCBI-GEO ]   C2orf61 [ EBI - ARRAY_EXPRESS ]   C2orf61 [ SEEK ]   C2orf61 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285051
GTEX Portal (Tissue expression)C2orf61
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N801   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N801  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N801
Splice isoforms : SwissVarQ8N801
PhosPhoSitePlusQ8N801
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)C2orf61
DMDM Disease mutations285051
Blocks (Seattle)C2orf61
SuperfamilyQ8N801
Human Protein AtlasENSG00000239605
Peptide AtlasQ8N801
HPRD08273
IPIIPI00167261   IPI00916953   
Protein Interaction databases
DIP (DOE-UCLA)Q8N801
IntAct (EBI)Q8N801
FunCoupENSG00000239605
BioGRIDC2orf61
STRING (EMBL)C2orf61
ZODIACC2orf61
Ontologies - Pathways
QuickGOQ8N801
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2orf61
Atlas of Cancer Signalling NetworkC2orf61
Wikipedia pathwaysC2orf61
Orthology - Evolution
OrthoDB285051
GeneTree (enSembl)ENSG00000239605
Phylogenetic Trees/Animal Genes : TreeFamC2orf61
HOVERGENQ8N801
HOGENOMQ8N801
Homologs : HomoloGeneC2orf61
Homology/Alignments : Family Browser (UCSC)C2orf61
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf61
dbVarC2orf61
ClinVarC2orf61
1000_GenomesC2orf61 
Exome Variant ServerC2orf61
ExAC (Exome Aggregation Consortium)C2orf61 (select the gene name)
Genetic variants : HAPMAP285051
Genomic Variants (DGV)C2orf61 [DGVbeta]
DECIPHER (Syndromes)2:47314130-47382517  ENSG00000239605
CONAN: Copy Number AnalysisC2orf61 
Mutations
ICGC Data PortalC2orf61 
TCGA Data PortalC2orf61 
Broad Tumor PortalC2orf61
OASIS PortalC2orf61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf61
DgiDB (Drug Gene Interaction Database)C2orf61
DoCM (Curated mutations)C2orf61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf61 (select a term)
intoGenC2orf61
Cancer3DC2orf61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf61
Genetic Testing Registry C2orf61
NextProtQ8N801 [Medical]
TSGene285051
GENETestsC2orf61
Huge Navigator C2orf61 [HugePedia]
snp3D : Map Gene to Disease285051
BioCentury BCIQC2orf61
ClinGenC2orf61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285051
Chemical/Pharm GKB GenePA162379319
Clinical trialC2orf61
Miscellaneous
canSAR (ICR)C2orf61 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf61
EVEXC2orf61
GoPubMedC2orf61
iHOPC2orf61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:15 CET 2017

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