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C2orf70 (chromosome 2 open reading frame 70)

Identity

Alias_symbol (synonym)LOC339778
Other alias-
HGNC (Hugo) C2orf70
LocusID (NCBI) 339778
Atlas_Id 61161
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 26562559 and ends at 26579532 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf70   27938
Cards
Entrez_Gene (NCBI)C2orf70  339778  chromosome 2 open reading frame 70
Aliases
GeneCards (Weizmann)C2orf70
Ensembl hg19 (Hinxton)ENSG00000173557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173557 [Gene_View]  chr2:26562559-26579532 [Contig_View]  C2orf70 [Vega]
ICGC DataPortalENSG00000173557
TCGA cBioPortalC2orf70
AceView (NCBI)C2orf70
Genatlas (Paris)C2orf70
WikiGenes339778
SOURCE (Princeton)C2orf70
Genetics Home Reference (NIH)C2orf70
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf70  -     chr2:26562559-26579532 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf70  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblC2orf70 - 2p23.3 [CytoView hg19]  C2orf70 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIC2orf70 [Mapview hg19]  C2orf70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA725022 AA758869 AK091483 BX114846 HY021315
RefSeq transcript (Entrez)NM_001105519 NM_001322426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf70
Cluster EST : UnigeneHs.407083 [ NCBI ]
CGAP (NCI)Hs.407083
Alternative Splicing GalleryENSG00000173557
Gene ExpressionC2orf70 [ NCBI-GEO ]   C2orf70 [ EBI - ARRAY_EXPRESS ]   C2orf70 [ SEEK ]   C2orf70 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339778
GTEX Portal (Tissue expression)C2orf70
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJV1
Splice isoforms : SwissVarA6NJV1
PhosPhoSitePlusA6NJV1
Domains : Interpro (EBI)UPF0573/UPF0605   
Domain families : Pfam (Sanger)DUF2475 (PF10629)   
Domain families : Pfam (NCBI)pfam10629   
Conserved Domain (NCBI)C2orf70
DMDM Disease mutations339778
Blocks (Seattle)C2orf70
SuperfamilyA6NJV1
Human Protein AtlasENSG00000173557
Peptide AtlasA6NJV1
IPIIPI00513897   IPI00916017   IPI01011528   
Protein Interaction databases
DIP (DOE-UCLA)A6NJV1
IntAct (EBI)A6NJV1
FunCoupENSG00000173557
BioGRIDC2orf70
STRING (EMBL)C2orf70
ZODIACC2orf70
Ontologies - Pathways
QuickGOA6NJV1
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkC2orf70
Atlas of Cancer Signalling NetworkC2orf70
Wikipedia pathwaysC2orf70
Orthology - Evolution
OrthoDB339778
GeneTree (enSembl)ENSG00000173557
Phylogenetic Trees/Animal Genes : TreeFamC2orf70
HOVERGENA6NJV1
HOGENOMA6NJV1
Homologs : HomoloGeneC2orf70
Homology/Alignments : Family Browser (UCSC)C2orf70
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf70
dbVarC2orf70
ClinVarC2orf70
1000_GenomesC2orf70 
Exome Variant ServerC2orf70
ExAC (Exome Aggregation Consortium)C2orf70 (select the gene name)
Genetic variants : HAPMAP339778
Genomic Variants (DGV)C2orf70 [DGVbeta]
DECIPHERC2orf70 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf70 
Mutations
ICGC Data PortalC2orf70 
TCGA Data PortalC2orf70 
Broad Tumor PortalC2orf70
OASIS PortalC2orf70 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf70  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf70
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf70
DgiDB (Drug Gene Interaction Database)C2orf70
DoCM (Curated mutations)C2orf70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf70 (select a term)
intoGenC2orf70
Cancer3DC2orf70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf70
Genetic Testing Registry C2orf70
NextProtA6NJV1 [Medical]
TSGene339778
GENETestsC2orf70
Target ValidationC2orf70
Huge Navigator C2orf70 [HugePedia]
snp3D : Map Gene to Disease339778
BioCentury BCIQC2orf70
ClinGenC2orf70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339778
Chemical/Pharm GKB GenePA162379496
Clinical trialC2orf70
Miscellaneous
canSAR (ICR)C2orf70 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf70
EVEXC2orf70
GoPubMedC2orf70
iHOPC2orf70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:09 CEST 2017

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