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C2orf71 (chromosome 2 open reading frame 71)

Identity

Alias_symbol (synonym)FLJ34931
RP54
Other alias
HGNC (Hugo) C2orf71
LocusID (NCBI) 388939
Atlas_Id 61162
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 29284556 and ends at 29297127 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf71   34383
Cards
Entrez_Gene (NCBI)C2orf71  388939  chromosome 2 open reading frame 71
AliasesRP54
GeneCards (Weizmann)C2orf71
Ensembl hg19 (Hinxton)ENSG00000179270 [Gene_View]  chr2:29284556-29297127 [Contig_View]  C2orf71 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179270 [Gene_View]  chr2:29284556-29297127 [Contig_View]  C2orf71 [Vega]
ICGC DataPortalENSG00000179270
TCGA cBioPortalC2orf71
AceView (NCBI)C2orf71
Genatlas (Paris)C2orf71
WikiGenes388939
SOURCE (Princeton)C2orf71
Genetics Home Reference (NIH)C2orf71
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf71  -     chr2:29284556-29297127 -  2p23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf71  -     2p23.2   [Description]    (hg38-Dec_2013)
EnsemblC2orf71 - 2p23.2 [CytoView hg19]  C2orf71 - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBIC2orf71 [Mapview hg19]  C2orf71 [Mapview hg38]
OMIM613425   613428   
Gene and transcription
Genbank (Entrez)AK092250 BM669582
RefSeq transcript (Entrez)NM_001029883
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_021427 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)C2orf71
Cluster EST : UnigeneHs.354243 [ NCBI ]
CGAP (NCI)Hs.354243
Alternative Splicing GalleryENSG00000179270
Gene ExpressionC2orf71 [ NCBI-GEO ]   C2orf71 [ EBI - ARRAY_EXPRESS ]   C2orf71 [ SEEK ]   C2orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388939
GTEX Portal (Tissue expression)C2orf71
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGG8
Splice isoforms : SwissVarA6NGG8
PhosPhoSitePlusA6NGG8
Domains : Interpro (EBI)Retinal_C2orf71   
Domain families : Pfam (Sanger)Retinal (PF15449)   
Domain families : Pfam (NCBI)pfam15449   
Conserved Domain (NCBI)C2orf71
DMDM Disease mutations388939
Blocks (Seattle)C2orf71
SuperfamilyA6NGG8
Human Protein AtlasENSG00000179270
Peptide AtlasA6NGG8
IPIIPI00397879   
Protein Interaction databases
DIP (DOE-UCLA)A6NGG8
IntAct (EBI)A6NGG8
FunCoupENSG00000179270
BioGRIDC2orf71
STRING (EMBL)C2orf71
ZODIACC2orf71
Ontologies - Pathways
QuickGOA6NGG8
Ontology : AmiGOphotoreceptor outer segment  visual perception  response to stimulus  primary cilium  
Ontology : EGO-EBIphotoreceptor outer segment  visual perception  response to stimulus  primary cilium  
NDEx NetworkC2orf71
Atlas of Cancer Signalling NetworkC2orf71
Wikipedia pathwaysC2orf71
Orthology - Evolution
OrthoDB388939
GeneTree (enSembl)ENSG00000179270
Phylogenetic Trees/Animal Genes : TreeFamC2orf71
HOVERGENA6NGG8
HOGENOMA6NGG8
Homologs : HomoloGeneC2orf71
Homology/Alignments : Family Browser (UCSC)C2orf71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf71
dbVarC2orf71
ClinVarC2orf71
1000_GenomesC2orf71 
Exome Variant ServerC2orf71
ExAC (Exome Aggregation Consortium)C2orf71 (select the gene name)
Genetic variants : HAPMAP388939
Genomic Variants (DGV)C2orf71 [DGVbeta]
DECIPHER (Syndromes)2:29284556-29297127  ENSG00000179270
CONAN: Copy Number AnalysisC2orf71 
Mutations
ICGC Data PortalC2orf71 
TCGA Data PortalC2orf71 
Broad Tumor PortalC2orf71
OASIS PortalC2orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch C2orf71
DgiDB (Drug Gene Interaction Database)C2orf71
DoCM (Curated mutations)C2orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf71 (select a term)
intoGenC2orf71
Cancer3DC2orf71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613425    613428   
Orphanet
MedgenC2orf71
Genetic Testing Registry C2orf71
NextProtA6NGG8 [Medical]
TSGene388939
GENETestsC2orf71
Huge Navigator C2orf71 [HugePedia]
snp3D : Map Gene to Disease388939
BioCentury BCIQC2orf71
ClinGenC2orf71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388939
Chemical/Pharm GKB GenePA162379508
Clinical trialC2orf71
Miscellaneous
canSAR (ICR)C2orf71 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf71
EVEXC2orf71
GoPubMedC2orf71
iHOPC2orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:16 CET 2017

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