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C2orf72 (chromosome 2 open reading frame 72)

Identity

Alias_symbol (synonym)LOC257407
Other alias-
HGNC (Hugo) C2orf72
LocusID (NCBI) 257407
Atlas_Id 61163
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231037566 and ends at 231049712 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZDHHC3 (3p21.31) / C2orf72 (2q37.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf72   27418
Cards
Entrez_Gene (NCBI)C2orf72  257407  chromosome 2 open reading frame 72
Aliases
GeneCards (Weizmann)C2orf72
Ensembl hg19 (Hinxton)ENSG00000204128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204128 [Gene_View]  chr2:231037566-231049712 [Contig_View]  C2orf72 [Vega]
ICGC DataPortalENSG00000204128
TCGA cBioPortalC2orf72
AceView (NCBI)C2orf72
Genatlas (Paris)C2orf72
WikiGenes257407
SOURCE (Princeton)C2orf72
Genetics Home Reference (NIH)C2orf72
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf72  -     chr2:231037566-231049712 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf72  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblC2orf72 - 2q37.1 [CytoView hg19]  C2orf72 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIC2orf72 [Mapview hg19]  C2orf72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF007149 AF070612 AF086098 AV658788 DA141613
RefSeq transcript (Entrez)NM_001144994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf72
Cluster EST : UnigeneHs.551993 [ NCBI ]
CGAP (NCI)Hs.551993
Alternative Splicing GalleryENSG00000204128
Gene ExpressionC2orf72 [ NCBI-GEO ]   C2orf72 [ EBI - ARRAY_EXPRESS ]   C2orf72 [ SEEK ]   C2orf72 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257407
GTEX Portal (Tissue expression)C2orf72
Human Protein AtlasENSG00000204128-C2orf72 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCS6
Splice isoforms : SwissVarA6NCS6
PhosPhoSitePlusA6NCS6
Domains : Interpro (EBI)DUF4630   
Domain families : Pfam (Sanger)DUF4630 (PF15443)   
Domain families : Pfam (NCBI)pfam15443   
Conserved Domain (NCBI)C2orf72
DMDM Disease mutations257407
Blocks (Seattle)C2orf72
SuperfamilyA6NCS6
Human Protein Atlas [tissue]ENSG00000204128-C2orf72 [tissue]
Peptide AtlasA6NCS6
IPIIPI00921293   
Protein Interaction databases
DIP (DOE-UCLA)A6NCS6
IntAct (EBI)A6NCS6
FunCoupENSG00000204128
BioGRIDC2orf72
STRING (EMBL)C2orf72
ZODIACC2orf72
Ontologies - Pathways
QuickGOA6NCS6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2orf72
Atlas of Cancer Signalling NetworkC2orf72
Wikipedia pathwaysC2orf72
Orthology - Evolution
OrthoDB257407
GeneTree (enSembl)ENSG00000204128
Phylogenetic Trees/Animal Genes : TreeFamC2orf72
HOVERGENA6NCS6
HOGENOMA6NCS6
Homologs : HomoloGeneC2orf72
Homology/Alignments : Family Browser (UCSC)C2orf72
Gene fusions - Rearrangements
Fusion: Tumor Portal C2orf72
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf72
dbVarC2orf72
ClinVarC2orf72
1000_GenomesC2orf72 
Exome Variant ServerC2orf72
ExAC (Exome Aggregation Consortium)ENSG00000204128
GNOMAD BrowserENSG00000204128
Genetic variants : HAPMAP257407
Genomic Variants (DGV)C2orf72 [DGVbeta]
DECIPHERC2orf72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf72 
Mutations
ICGC Data PortalC2orf72 
TCGA Data PortalC2orf72 
Broad Tumor PortalC2orf72
OASIS PortalC2orf72 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC2orf72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf72
DgiDB (Drug Gene Interaction Database)C2orf72
DoCM (Curated mutations)C2orf72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf72 (select a term)
intoGenC2orf72
Cancer3DC2orf72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf72
Genetic Testing Registry C2orf72
NextProtA6NCS6 [Medical]
TSGene257407
GENETestsC2orf72
Target ValidationC2orf72
Huge Navigator C2orf72 [HugePedia]
snp3D : Map Gene to Disease257407
BioCentury BCIQC2orf72
ClinGenC2orf72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257407
Chemical/Pharm GKB GenePA162379516
Clinical trialC2orf72
Miscellaneous
canSAR (ICR)C2orf72 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf72
EVEXC2orf72
GoPubMedC2orf72
iHOPC2orf72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:27 CET 2017

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