Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C2orf74 (chromosome 2 open reading frame 74)

Identity

Alias_symbol (synonym)LOC339804
Other alias-
HGNC (Hugo) C2orf74
LocusID (NCBI) 339804
Atlas_Id 61165
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 61145068 and ends at 61164829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA2026 (9p24.1) / C2orf74 (2p15)ZNF638 (2p13.2) / C2orf74 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(2;2)(p13;p15) ZNF638/C2orf74

External links

Nomenclature
HGNC (Hugo)C2orf74   34439
Cards
Entrez_Gene (NCBI)C2orf74  339804  chromosome 2 open reading frame 74
Aliases
GeneCards (Weizmann)C2orf74
Ensembl hg19 (Hinxton)ENSG00000237651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237651 [Gene_View]  ENSG00000237651 [Sequence]  chr2:61145068-61164829 [Contig_View]  C2orf74 [Vega]
ICGC DataPortalENSG00000237651
TCGA cBioPortalC2orf74
AceView (NCBI)C2orf74
Genatlas (Paris)C2orf74
WikiGenes339804
SOURCE (Princeton)C2orf74
Genetics Home Reference (NIH)C2orf74
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf74  -     chr2:61145068-61164829 +  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf74  -     2p15   [Description]    (hg19-Feb_2009)
GoldenPathC2orf74 - 2p15 [CytoView hg19]  C2orf74 - 2p15 [CytoView hg38]
ImmunoBaseENSG00000237651
Mapping of homologs : NCBIC2orf74 [Mapview hg19]  C2orf74 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC014578 BP422302
RefSeq transcript (Entrez)NM_001143959 NM_001143960 NM_001316317 NM_001367069 NM_001367070 NM_001367071
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf74
Alternative Splicing GalleryENSG00000237651
Gene ExpressionC2orf74 [ NCBI-GEO ]   C2orf74 [ EBI - ARRAY_EXPRESS ]   C2orf74 [ SEEK ]   C2orf74 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339804
GTEX Portal (Tissue expression)C2orf74
Human Protein AtlasENSG00000237651-C2orf74 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MZ97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MZ97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MZ97
Splice isoforms : SwissVarA8MZ97
PhosPhoSitePlusA8MZ97
Domains : Interpro (EBI)DUF4642   
Domain families : Pfam (Sanger)DUF4642 (PF15484)   
Domain families : Pfam (NCBI)pfam15484   
Conserved Domain (NCBI)C2orf74
DMDM Disease mutations339804
Blocks (Seattle)C2orf74
SuperfamilyA8MZ97
Human Protein Atlas [tissue]ENSG00000237651-C2orf74 [tissue]
Peptide AtlasA8MZ97
IPIIPI00872282   IPI00921037   
Protein Interaction databases
DIP (DOE-UCLA)A8MZ97
IntAct (EBI)A8MZ97
FunCoupENSG00000237651
BioGRIDC2orf74
STRING (EMBL)C2orf74
ZODIACC2orf74
Ontologies - Pathways
QuickGOA8MZ97
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC2orf74
Atlas of Cancer Signalling NetworkC2orf74
Wikipedia pathwaysC2orf74
Orthology - Evolution
OrthoDB339804
GeneTree (enSembl)ENSG00000237651
Phylogenetic Trees/Animal Genes : TreeFamC2orf74
HOGENOMA8MZ97
Homologs : HomoloGeneC2orf74
Homology/Alignments : Family Browser (UCSC)C2orf74
Gene fusions - Rearrangements
Fusion : QuiverC2orf74
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf74
dbVarC2orf74
ClinVarC2orf74
1000_GenomesC2orf74 
Exome Variant ServerC2orf74
ExAC (Exome Aggregation Consortium)ENSG00000237651
GNOMAD BrowserENSG00000237651
Varsome BrowserC2orf74
Genetic variants : HAPMAP339804
Genomic Variants (DGV)C2orf74 [DGVbeta]
DECIPHERC2orf74 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf74 
Mutations
ICGC Data PortalC2orf74 
TCGA Data PortalC2orf74 
Broad Tumor PortalC2orf74
OASIS PortalC2orf74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf74  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC2orf74
Mutations and Diseases : HGMDC2orf74
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf74
DgiDB (Drug Gene Interaction Database)C2orf74
DoCM (Curated mutations)C2orf74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf74 (select a term)
intoGenC2orf74
Cancer3DC2orf74(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC2orf74
MedgenC2orf74
Genetic Testing Registry C2orf74
NextProtA8MZ97 [Medical]
TSGene339804
GENETestsC2orf74
Target ValidationC2orf74
Huge Navigator C2orf74 [HugePedia]
snp3D : Map Gene to Disease339804
BioCentury BCIQC2orf74
ClinGenC2orf74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339804
Chemical/Pharm GKB GenePA162379547
Clinical trialC2orf74
Miscellaneous
canSAR (ICR)C2orf74 (select the gene name)
HarmonizomeC2orf74
DataMed IndexC2orf74
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf74
EVEXC2orf74
GoPubMedC2orf74
iHOPC2orf74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun May 10 11:26:35 CEST 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.