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C2orf78 (chromosome 2 open reading frame 78)

Identity

Alias_symbol (synonym)FLJ43987
hCG1989538
COG5373
Other alias
HGNC (Hugo) C2orf78
LocusID (NCBI) 388960
Atlas_Id 61167
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 73784189 and ends at 73817147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TET3 (2p13.1) / C2orf78 (2p13.1)ZNF638 (2p13.2) / C2orf78 (2p13.1)ZNF638 C2orf78
TET3 C2orf78

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf78   34349
Cards
Entrez_Gene (NCBI)C2orf78  388960  chromosome 2 open reading frame 78
AliasesCOG5373; hCG1989538
GeneCards (Weizmann)C2orf78
Ensembl hg19 (Hinxton)ENSG00000187833 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187833 [Gene_View]  chr2:73784189-73817147 [Contig_View]  C2orf78 [Vega]
ICGC DataPortalENSG00000187833
TCGA cBioPortalC2orf78
AceView (NCBI)C2orf78
Genatlas (Paris)C2orf78
WikiGenes388960
SOURCE (Princeton)C2orf78
Genetics Home Reference (NIH)C2orf78
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf78  -     chr2:73784189-73817147 +  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf78  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblC2orf78 - 2p13.1 [CytoView hg19]  C2orf78 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIC2orf78 [Mapview hg19]  C2orf78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125975
RefSeq transcript (Entrez)NM_001080474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf78
Cluster EST : UnigeneHs.456833 [ NCBI ]
CGAP (NCI)Hs.456833
Alternative Splicing GalleryENSG00000187833
Gene ExpressionC2orf78 [ NCBI-GEO ]   C2orf78 [ EBI - ARRAY_EXPRESS ]   C2orf78 [ SEEK ]   C2orf78 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388960
GTEX Portal (Tissue expression)C2orf78
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCI8
Splice isoforms : SwissVarA6NCI8
PhosPhoSitePlusA6NCI8
Domains : Interpro (EBI)DUF4629   
Domain families : Pfam (Sanger)DUF4629 (PF15442)   
Domain families : Pfam (NCBI)pfam15442   
Conserved Domain (NCBI)C2orf78
DMDM Disease mutations388960
Blocks (Seattle)C2orf78
SuperfamilyA6NCI8
Human Protein AtlasENSG00000187833
Peptide AtlasA6NCI8
IPIIPI00397889   IPI01008891   
Protein Interaction databases
DIP (DOE-UCLA)A6NCI8
IntAct (EBI)A6NCI8
FunCoupENSG00000187833
BioGRIDC2orf78
STRING (EMBL)C2orf78
ZODIACC2orf78
Ontologies - Pathways
QuickGOA6NCI8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2orf78
Atlas of Cancer Signalling NetworkC2orf78
Wikipedia pathwaysC2orf78
Orthology - Evolution
OrthoDB388960
GeneTree (enSembl)ENSG00000187833
Phylogenetic Trees/Animal Genes : TreeFamC2orf78
HOVERGENA6NCI8
HOGENOMA6NCI8
Homologs : HomoloGeneC2orf78
Homology/Alignments : Family Browser (UCSC)C2orf78
Gene fusions - Rearrangements
Fusion: TCGAZNF638 C2orf78
Fusion: TCGATET3 C2orf78
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf78
dbVarC2orf78
ClinVarC2orf78
1000_GenomesC2orf78 
Exome Variant ServerC2orf78
ExAC (Exome Aggregation Consortium)C2orf78 (select the gene name)
Genetic variants : HAPMAP388960
Genomic Variants (DGV)C2orf78 [DGVbeta]
DECIPHERC2orf78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf78 
Mutations
ICGC Data PortalC2orf78 
TCGA Data PortalC2orf78 
Broad Tumor PortalC2orf78
OASIS PortalC2orf78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf78
DgiDB (Drug Gene Interaction Database)C2orf78
DoCM (Curated mutations)C2orf78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf78 (select a term)
intoGenC2orf78
Cancer3DC2orf78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf78
Genetic Testing Registry C2orf78
NextProtA6NCI8 [Medical]
TSGene388960
GENETestsC2orf78
Target ValidationC2orf78
Huge Navigator C2orf78 [HugePedia]
snp3D : Map Gene to Disease388960
BioCentury BCIQC2orf78
ClinGenC2orf78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388960
Chemical/Pharm GKB GenePA162379600
Clinical trialC2orf78
Miscellaneous
canSAR (ICR)C2orf78 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf78
EVEXC2orf78
GoPubMedC2orf78
iHOPC2orf78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:17 CEST 2017

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