Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C2orf80 (chromosome 2 open reading frame 80)

Identity

Alias_symbol (synonym)LOC389073
GONDA1
Other alias
HGNC (Hugo) C2orf80
LocusID (NCBI) 389073
Atlas_Id 61168
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 208165347 and ends at 208190049 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf80   34352
Cards
Entrez_Gene (NCBI)C2orf80  389073  chromosome 2 open reading frame 80
AliasesGONDA1
GeneCards (Weizmann)C2orf80
Ensembl hg19 (Hinxton)ENSG00000188674 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188674 [Gene_View]  chr2:208165347-208190049 [Contig_View]  C2orf80 [Vega]
ICGC DataPortalENSG00000188674
TCGA cBioPortalC2orf80
AceView (NCBI)C2orf80
Genatlas (Paris)C2orf80
WikiGenes389073
SOURCE (Princeton)C2orf80
Genetics Home Reference (NIH)C2orf80
Genomic and cartography
GoldenPath hg38 (UCSC)C2orf80  -     chr2:208165347-208190049 -  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C2orf80  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblC2orf80 - 2q33.3 [CytoView hg19]  C2orf80 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBIC2orf80 [Mapview hg19]  C2orf80 [Mapview hg38]
OMIM615536   
Gene and transcription
Genbank (Entrez)AW136505 BC035737 DB541912
RefSeq transcript (Entrez)NM_001099334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C2orf80
Cluster EST : UnigeneHs.198416 [ NCBI ]
CGAP (NCI)Hs.198416
Alternative Splicing GalleryENSG00000188674
Gene ExpressionC2orf80 [ NCBI-GEO ]   C2orf80 [ EBI - ARRAY_EXPRESS ]   C2orf80 [ SEEK ]   C2orf80 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389073
GTEX Portal (Tissue expression)C2orf80
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P641   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P641  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P641
Splice isoforms : SwissVarQ0P641
PhosPhoSitePlusQ0P641
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C2orf80
DMDM Disease mutations389073
Blocks (Seattle)C2orf80
SuperfamilyQ0P641
Human Protein AtlasENSG00000188674
Peptide AtlasQ0P641
IPIIPI00374194   IPI00926891   IPI00926226   IPI00927301   IPI00926630   IPI00927745   IPI00927055   
Protein Interaction databases
DIP (DOE-UCLA)Q0P641
IntAct (EBI)Q0P641
FunCoupENSG00000188674
BioGRIDC2orf80
STRING (EMBL)C2orf80
ZODIACC2orf80
Ontologies - Pathways
QuickGOQ0P641
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC2orf80
Atlas of Cancer Signalling NetworkC2orf80
Wikipedia pathwaysC2orf80
Orthology - Evolution
OrthoDB389073
GeneTree (enSembl)ENSG00000188674
Phylogenetic Trees/Animal Genes : TreeFamC2orf80
HOVERGENQ0P641
HOGENOMQ0P641
Homologs : HomoloGeneC2orf80
Homology/Alignments : Family Browser (UCSC)C2orf80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf80
dbVarC2orf80
ClinVarC2orf80
1000_GenomesC2orf80 
Exome Variant ServerC2orf80
ExAC (Exome Aggregation Consortium)C2orf80 (select the gene name)
Genetic variants : HAPMAP389073
Genomic Variants (DGV)C2orf80 [DGVbeta]
DECIPHERC2orf80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC2orf80 
Mutations
ICGC Data PortalC2orf80 
TCGA Data PortalC2orf80 
Broad Tumor PortalC2orf80
OASIS PortalC2orf80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf80
DgiDB (Drug Gene Interaction Database)C2orf80
DoCM (Curated mutations)C2orf80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf80 (select a term)
intoGenC2orf80
Cancer3DC2orf80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615536   
Orphanet
MedgenC2orf80
Genetic Testing Registry C2orf80
NextProtQ0P641 [Medical]
TSGene389073
GENETestsC2orf80
Target ValidationC2orf80
Huge Navigator C2orf80 [HugePedia]
snp3D : Map Gene to Disease389073
BioCentury BCIQC2orf80
ClinGenC2orf80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389073
Chemical/Pharm GKB GenePA162379620
Clinical trialC2orf80
Miscellaneous
canSAR (ICR)C2orf80 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf80
EVEXC2orf80
GoPubMedC2orf80
iHOPC2orf80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:11:00 CEST 2017

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