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C2orf83 (chromosome 2 open reading frame 83)

Identity

Alias_symbol (synonym)DKFZp547H025
Other alias-
HGNC (Hugo) C2orf83
LocusID (NCBI) 56918
Atlas_Id 61171
Location 2q36.3  [Link to chromosome band 2q36]
Location_base_pair Starts at 228474806 and ends at 228498036 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C2orf83   25344
Cards
Entrez_Gene (NCBI)C2orf83  56918  chromosome 2 open reading frame 83
Aliases
GeneCards (Weizmann)C2orf83
Ensembl hg19 (Hinxton)ENSG00000042304 [Gene_View]  chr2:228474806-228498036 [Contig_View]  C2orf83 [Vega]
Ensembl hg38 (Hinxton)ENSG00000042304 [Gene_View]  chr2:228474806-228498036 [Contig_View]  C2orf83 [Vega]
ICGC DataPortalENSG00000042304
TCGA cBioPortalC2orf83
AceView (NCBI)C2orf83
Genatlas (Paris)C2orf83
WikiGenes56918
SOURCE (Princeton)C2orf83
Genetics Home Reference (NIH)C2orf83
Genomic and cartography
GoldenPath hg19 (UCSC)C2orf83  -     chr2:228474806-228498036 -  2q36.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C2orf83  -     2q36.3   [Description]    (hg38-Dec_2013)
EnsemblC2orf83 - 2q36.3 [CytoView hg19]  C2orf83 - 2q36.3 [CytoView hg38]
Mapping of homologs : NCBIC2orf83 [Mapview hg19]  C2orf83 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055355 AL359944 AM393148 AM393273 BC131618
RefSeq transcript (Entrez)NM_001162483 NM_020161
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)C2orf83
Cluster EST : UnigeneHs.283092 [ NCBI ]
CGAP (NCI)Hs.283092
Alternative Splicing GalleryENSG00000042304
Gene ExpressionC2orf83 [ NCBI-GEO ]   C2orf83 [ EBI - ARRAY_EXPRESS ]   C2orf83 [ SEEK ]   C2orf83 [ MEM ]
Gene Expression Viewer (FireBrowse)C2orf83 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56918
GTEX Portal (Tissue expression)C2orf83
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53S99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53S99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53S99
Splice isoforms : SwissVarQ53S99
PhosPhoSitePlusQ53S99
Domains : Interpro (EBI)Folate_carrier   
Domain families : Pfam (Sanger)Folate_carrier (PF01770)   
Domain families : Pfam (NCBI)pfam01770   
Conserved Domain (NCBI)C2orf83
DMDM Disease mutations56918
Blocks (Seattle)C2orf83
SuperfamilyQ53S99
Human Protein AtlasENSG00000042304
Peptide AtlasQ53S99
HPRD13208
IPIIPI00024569   IPI00915948   
Protein Interaction databases
DIP (DOE-UCLA)Q53S99
IntAct (EBI)Q53S99
FunCoupENSG00000042304
BioGRIDC2orf83
STRING (EMBL)C2orf83
ZODIACC2orf83
Ontologies - Pathways
QuickGOQ53S99
Ontology : AmiGOtransport  membrane  
Ontology : EGO-EBItransport  membrane  
NDEx NetworkC2orf83
Atlas of Cancer Signalling NetworkC2orf83
Wikipedia pathwaysC2orf83
Orthology - Evolution
OrthoDB56918
GeneTree (enSembl)ENSG00000042304
Phylogenetic Trees/Animal Genes : TreeFamC2orf83
HOVERGENQ53S99
HOGENOMQ53S99
Homologs : HomoloGeneC2orf83
Homology/Alignments : Family Browser (UCSC)C2orf83
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC2orf83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C2orf83
dbVarC2orf83
ClinVarC2orf83
1000_GenomesC2orf83 
Exome Variant ServerC2orf83
ExAC (Exome Aggregation Consortium)C2orf83 (select the gene name)
Genetic variants : HAPMAP56918
Genomic Variants (DGV)C2orf83 [DGVbeta]
DECIPHER (Syndromes)2:228474806-228498036  ENSG00000042304
CONAN: Copy Number AnalysisC2orf83 
Mutations
ICGC Data PortalC2orf83 
TCGA Data PortalC2orf83 
Broad Tumor PortalC2orf83
OASIS PortalC2orf83 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC2orf83  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC2orf83
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C2orf83
DgiDB (Drug Gene Interaction Database)C2orf83
DoCM (Curated mutations)C2orf83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C2orf83 (select a term)
intoGenC2orf83
Cancer3DC2orf83(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC2orf83
Genetic Testing Registry C2orf83
NextProtQ53S99 [Medical]
TSGene56918
GENETestsC2orf83
Huge Navigator C2orf83 [HugePedia]
snp3D : Map Gene to Disease56918
BioCentury BCIQC2orf83
ClinGenC2orf83
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56918
Chemical/Pharm GKB GenePA164717149
Clinical trialC2orf83
Miscellaneous
canSAR (ICR)C2orf83 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC2orf83
EVEXC2orf83
GoPubMedC2orf83
iHOPC2orf83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:18 CET 2017

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