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C3orf14 (chromosome 3 open reading frame 14)

Identity

Alias_symbol (synonym)HT021
Other alias
HGNC (Hugo) C3orf14
LocusID (NCBI) 57415
Atlas_Id 61175
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 62318973 and ends at 62336213 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZBTB20 (3q13.31) / C3orf14 (3p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf14   25024
Cards
Entrez_Gene (NCBI)C3orf14  57415  chromosome 3 open reading frame 14
AliasesHT021
GeneCards (Weizmann)C3orf14
Ensembl hg19 (Hinxton)ENSG00000114405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114405 [Gene_View]  chr3:62318973-62336213 [Contig_View]  C3orf14 [Vega]
ICGC DataPortalENSG00000114405
TCGA cBioPortalC3orf14
AceView (NCBI)C3orf14
Genatlas (Paris)C3orf14
WikiGenes57415
SOURCE (Princeton)C3orf14
Genetics Home Reference (NIH)C3orf14
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf14  -     chr3:62318973-62336213 +  3p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf14  -     3p14.2   [Description]    (hg19-Feb_2009)
EnsemblC3orf14 - 3p14.2 [CytoView hg19]  C3orf14 - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf14 [Mapview hg19]  C3orf14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF236158 AK310431 AK313915 BC017772 BE047745
RefSeq transcript (Entrez)NM_001291941 NM_001291942 NM_001291943 NM_020685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf14
Cluster EST : UnigeneHs.594911 [ NCBI ]
CGAP (NCI)Hs.594911
Alternative Splicing GalleryENSG00000114405
Gene ExpressionC3orf14 [ NCBI-GEO ]   C3orf14 [ EBI - ARRAY_EXPRESS ]   C3orf14 [ SEEK ]   C3orf14 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57415
GTEX Portal (Tissue expression)C3orf14
Human Protein AtlasENSG00000114405-C3orf14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBI5
Splice isoforms : SwissVarQ9HBI5
PhosPhoSitePlusQ9HBI5
Domains : Interpro (EBI)DUF4570   
Domain families : Pfam (Sanger)DUF4570 (PF15134)   
Domain families : Pfam (NCBI)pfam15134   
Conserved Domain (NCBI)C3orf14
DMDM Disease mutations57415
Blocks (Seattle)C3orf14
SuperfamilyQ9HBI5
Human Protein Atlas [tissue]ENSG00000114405-C3orf14 [tissue]
Peptide AtlasQ9HBI5
HPRD12819
IPIIPI00010258   IPI00944984   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBI5
IntAct (EBI)Q9HBI5
FunCoupENSG00000114405
BioGRIDC3orf14
STRING (EMBL)C3orf14
ZODIACC3orf14
Ontologies - Pathways
QuickGOQ9HBI5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf14
Atlas of Cancer Signalling NetworkC3orf14
Wikipedia pathwaysC3orf14
Orthology - Evolution
OrthoDB57415
GeneTree (enSembl)ENSG00000114405
Phylogenetic Trees/Animal Genes : TreeFamC3orf14
HOVERGENQ9HBI5
HOGENOMQ9HBI5
Homologs : HomoloGeneC3orf14
Homology/Alignments : Family Browser (UCSC)C3orf14
Gene fusions - Rearrangements
Tumor Fusion PortalC3orf14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf14
dbVarC3orf14
ClinVarC3orf14
1000_GenomesC3orf14 
Exome Variant ServerC3orf14
ExAC (Exome Aggregation Consortium)ENSG00000114405
GNOMAD BrowserENSG00000114405
Genetic variants : HAPMAP57415
Genomic Variants (DGV)C3orf14 [DGVbeta]
DECIPHERC3orf14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf14 
Mutations
ICGC Data PortalC3orf14 
TCGA Data PortalC3orf14 
Broad Tumor PortalC3orf14
OASIS PortalC3orf14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf14
DgiDB (Drug Gene Interaction Database)C3orf14
DoCM (Curated mutations)C3orf14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf14 (select a term)
intoGenC3orf14
Cancer3DC3orf14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC3orf14
MedgenC3orf14
Genetic Testing Registry C3orf14
NextProtQ9HBI5 [Medical]
TSGene57415
GENETestsC3orf14
Target ValidationC3orf14
Huge Navigator C3orf14 [HugePedia]
snp3D : Map Gene to Disease57415
BioCentury BCIQC3orf14
ClinGenC3orf14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57415
Chemical/Pharm GKB GenePA134883066
Clinical trialC3orf14
Miscellaneous
canSAR (ICR)C3orf14 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf14
EVEXC3orf14
GoPubMedC3orf14
iHOPC3orf14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:04 CET 2017

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