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C3orf17 (chromosome 3 open reading frame 17)

Identity

Other aliasNET17
HGNC (Hugo) C3orf17
LocusID (NCBI) 25871
Atlas_Id 61176
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112721292 and ends at 112738555 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
INSIG1 (7q36.2) / C3orf17 (3q13.2)LOC100507412 (-) / C3orf17 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf17   24496
Cards
Entrez_Gene (NCBI)C3orf17  25871  chromosome 3 open reading frame 17
AliasesNET17
GeneCards (Weizmann)C3orf17
Ensembl hg19 (Hinxton)ENSG00000163608 [Gene_View]  chr3:112721292-112738555 [Contig_View]  C3orf17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163608 [Gene_View]  chr3:112721292-112738555 [Contig_View]  C3orf17 [Vega]
ICGC DataPortalENSG00000163608
TCGA cBioPortalC3orf17
AceView (NCBI)C3orf17
Genatlas (Paris)C3orf17
WikiGenes25871
SOURCE (Princeton)C3orf17
Genetics Home Reference (NIH)C3orf17
Genomic and cartography
GoldenPath hg19 (UCSC)C3orf17  -     chr3:112721292-112738555 -  3q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C3orf17  -     3q13.2   [Description]    (hg38-Dec_2013)
EnsemblC3orf17 - 3q13.2 [CytoView hg19]  C3orf17 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf17 [Mapview hg19]  C3orf17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024325 AK092546 AK293218 AK295165 AK295954
RefSeq transcript (Entrez)NM_001025072 NM_001025073 NM_015412
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)C3orf17
Cluster EST : UnigeneHs.591288 [ NCBI ]
CGAP (NCI)Hs.591288
Alternative Splicing GalleryENSG00000163608
Gene ExpressionC3orf17 [ NCBI-GEO ]   C3orf17 [ EBI - ARRAY_EXPRESS ]   C3orf17 [ SEEK ]   C3orf17 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25871
GTEX Portal (Tissue expression)C3orf17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NW34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NW34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NW34
Splice isoforms : SwissVarQ6NW34
PhosPhoSitePlusQ6NW34
Domains : Interpro (EBI)DUF4477   
Domain families : Pfam (Sanger)DUF4477 (PF14780)   
Domain families : Pfam (NCBI)pfam14780   
Conserved Domain (NCBI)C3orf17
DMDM Disease mutations25871
Blocks (Seattle)C3orf17
SuperfamilyQ6NW34
Human Protein AtlasENSG00000163608
Peptide AtlasQ6NW34
HPRD08524
IPIIPI00295519   IPI00470909   IPI00744149   IPI00876914   IPI00908539   IPI00945053   IPI00946219   IPI00945576   IPI00947255   IPI00945199   IPI00947395   
Protein Interaction databases
DIP (DOE-UCLA)Q6NW34
IntAct (EBI)Q6NW34
FunCoupENSG00000163608
BioGRIDC3orf17
STRING (EMBL)C3orf17
ZODIACC3orf17
Ontologies - Pathways
QuickGOQ6NW34
Ontology : AmiGOnucleus  integral component of membrane  negative regulation of neuron differentiation  positive regulation of Notch signaling pathway  
Ontology : EGO-EBInucleus  integral component of membrane  negative regulation of neuron differentiation  positive regulation of Notch signaling pathway  
NDEx NetworkC3orf17
Atlas of Cancer Signalling NetworkC3orf17
Wikipedia pathwaysC3orf17
Orthology - Evolution
OrthoDB25871
GeneTree (enSembl)ENSG00000163608
Phylogenetic Trees/Animal Genes : TreeFamC3orf17
HOVERGENQ6NW34
HOGENOMQ6NW34
Homologs : HomoloGeneC3orf17
Homology/Alignments : Family Browser (UCSC)C3orf17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf17
dbVarC3orf17
ClinVarC3orf17
1000_GenomesC3orf17 
Exome Variant ServerC3orf17
ExAC (Exome Aggregation Consortium)C3orf17 (select the gene name)
Genetic variants : HAPMAP25871
Genomic Variants (DGV)C3orf17 [DGVbeta]
DECIPHER (Syndromes)3:112721292-112738555  ENSG00000163608
CONAN: Copy Number AnalysisC3orf17 
Mutations
ICGC Data PortalC3orf17 
TCGA Data PortalC3orf17 
Broad Tumor PortalC3orf17
OASIS PortalC3orf17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf17
DgiDB (Drug Gene Interaction Database)C3orf17
DoCM (Curated mutations)C3orf17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf17 (select a term)
intoGenC3orf17
Cancer3DC3orf17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf17
Genetic Testing Registry C3orf17
NextProtQ6NW34 [Medical]
TSGene25871
GENETestsC3orf17
Huge Navigator C3orf17 [HugePedia]
snp3D : Map Gene to Disease25871
BioCentury BCIQC3orf17
ClinGenC3orf17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25871
Chemical/Pharm GKB GenePA134948355
Clinical trialC3orf17
Miscellaneous
canSAR (ICR)C3orf17 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf17
EVEXC3orf17
GoPubMedC3orf17
iHOPC3orf17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:19 CET 2017

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