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C3orf18 (chromosome 3 open reading frame 18)

Identity

Alias_symbol (synonym)G20
Other alias
HGNC (Hugo) C3orf18
LocusID (NCBI) 51161
Atlas_Id 61177
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 50558025 and ends at 50567792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf18   24837
Cards
Entrez_Gene (NCBI)C3orf18  51161  chromosome 3 open reading frame 18
AliasesG20
GeneCards (Weizmann)C3orf18
Ensembl hg19 (Hinxton)ENSG00000088543 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088543 [Gene_View]  chr3:50558025-50567792 [Contig_View]  C3orf18 [Vega]
ICGC DataPortalENSG00000088543
TCGA cBioPortalC3orf18
AceView (NCBI)C3orf18
Genatlas (Paris)C3orf18
WikiGenes51161
SOURCE (Princeton)C3orf18
Genetics Home Reference (NIH)C3orf18
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf18  -     chr3:50558025-50567792 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf18  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblC3orf18 - 3p21.31 [CytoView hg19]  C3orf18 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIC3orf18 [Mapview hg19]  C3orf18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA716515 AA908974 AF188706 AK124438 AK130227
RefSeq transcript (Entrez)NM_001171740 NM_001171741 NM_001171743 NM_016210
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf18
Cluster EST : UnigeneHs.517860 [ NCBI ]
CGAP (NCI)Hs.517860
Alternative Splicing GalleryENSG00000088543
Gene ExpressionC3orf18 [ NCBI-GEO ]   C3orf18 [ EBI - ARRAY_EXPRESS ]   C3orf18 [ SEEK ]   C3orf18 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51161
GTEX Portal (Tissue expression)C3orf18
Human Protein AtlasENSG02000098=43-C3orf18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK00
Splice isoforms : SwissVarQ9UK00
PhosPhoSitePlusQ9UK00
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf18
DMDM Disease mutations51161
Blocks (Seattle)C3orf18
SuperfamilyQ9UK00
Human Protein Atlas [tissue]ENSG00000088543-C3orf18 [tissue]
Peptide AtlasQ9UK00
HPRD16654
IPIIPI00007820   IPI00442782 nbsp+&ībsp;IPI00927943   IPI00927694   IPI00927390   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK00
IntAct (EBI)Q9UK00
FunCoupENSG00000088543
BioGRIDC3orf18
STRING (EMBL)C3orf18
ZODIACC3orf18
Ontologies - Pathways
QuickGOQ9UK00Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC3orf18
Atlas of Cancer Signalling NetworkC3orf18
Wikipedia pathwaysC3orf18
Orthology - Evolution
OrthoDB51161
GeneTree (enSembl)ENSG00000088543
Phylogenetic Trees/Animal Genes : TreeFamC3orf18
HOVERGENQ9UK00
HOGENOMQ9UK00
Homologs : HomoloGeneC3orf18
Homology/Alignments : Family Browser (UCSC)C3orf18
Gene fusions - Rearrangements
Tumor Fusion PortalC3orf18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf18
dbVarC3orf18
ClinVarC3orf18
1000_GenomesC3orf18 
Exome Variant ServerC3orf18
ExAC (Exome Aggregation Consortium)ENSG00000088543
GNOMAD BrowserENSG00000088543
Genetic variants : HAPMAP51161
Genomic Variants (DGV)C3orf18 [DGVbeta]
DECIPHERC3orf18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf18 
Mutations
ICGC Data PortalC3orf18 
TCGA Data PortalC3orf18 
Broad Tumor PortalC3orf18
OASIS PortalC3orf18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf18
DgiDB (Drug Gene Interaction Database)C3orf18
DoCM (Curated mutations)C3orf18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf18 (select a term)
intoGenC3orf18
Cancer3DC3orf18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC3orf18
MedgenC3orf18
Genetic Testing Registry C3orf18
NextProtQ9UK00 [Medical]
TSGene51161
GENETestsC3orf18
Target ValidationC3orf18
Huge Navigator C3orf18 [HugePedia]
snp3D : Map Gene to Disease51161
BioCentury BCIQC3orf18
ClinGenC3orf18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51161
Chemical/Pharm GKB GenePA134941482
Clinical trialC3orf18
Miscellaneous
canSAR (ICR)C3orf18 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf18
EVEXC3orf18
GoPubMedC3orf18
iHOPC3orf18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:04 CET 2017

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