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C3orf20 (chromosome 3 open reading frame 20)

Identity

Alias_symbol (synonym)DKFZP434N1817
Other alias-
HGNC (Hugo) C3orf20
LocusID (NCBI) 84077
Atlas_Id 61178
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 14675099 and ends at 14773036 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf20   25320
Cards
Entrez_Gene (NCBI)C3orf20  84077  chromosome 3 open reading frame 20
Aliases
GeneCards (Weizmann)C3orf20
Ensembl hg19 (Hinxton)ENSG00000131379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131379 [Gene_View]  chr3:14675099-14773036 [Contig_View]  C3orf20 [Vega]
ICGC DataPortalENSG00000131379
TCGA cBioPortalC3orf20
AceView (NCBI)C3orf20
Genatlas (Paris)C3orf20
WikiGenes84077
SOURCE (Princeton)C3orf20
Genetics Home Reference (NIH)C3orf20
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf20  -     chr3:14675099-14773036 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf20  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblC3orf20 - 3p25.1 [CytoView hg19]  C3orf20 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIC3orf20 [Mapview hg19]  C3orf20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131481 AL136781 AL834386 AM392830 AM392982
RefSeq transcript (Entrez)NM_001184957 NM_001184958 NM_032137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf20
Cluster EST : UnigeneHs.661452 [ NCBI ]
CGAP (NCI)Hs.661452
Alternative Splicing GalleryENSG00000131379
Gene ExpressionC3orf20 [ NCBI-GEO ]   C3orf20 [ EBI - ARRAY_EXPRESS ]   C3orf20 [ SEEK ]   C3orf20 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84077
GTEX Portal (Tissue expression)C3orf20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND61
Splice isoforms : SwissVarQ8ND61
PhosPhoSitePlusQ8ND61
Domains : Interpro (EBI)FAM194   
Domain families : Pfam (Sanger)FAM194 (PF14977)   
Domain families : Pfam (NCBI)pfam14977   
Conserved Domain (NCBI)C3orf20
DMDM Disease mutations84077
Blocks (Seattle)C3orf20
SuperfamilyQ8ND61
Human Protein AtlasENSG00000131379
Peptide AtlasQ8ND61
HPRD12821
IPIIPI00301726   IPI00739605   IPI00916200   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND61
IntAct (EBI)Q8ND61
FunCoupENSG00000131379
BioGRIDC3orf20
STRING (EMBL)C3orf20
ZODIACC3orf20
Ontologies - Pathways
QuickGOQ8ND61
Ontology : AmiGOcytoplasm  integral component of membrane  
Ontology : EGO-EBIcytoplasm  integral component of membrane  
NDEx NetworkC3orf20
Atlas of Cancer Signalling NetworkC3orf20
Wikipedia pathwaysC3orf20
Orthology - Evolution
OrthoDB84077
GeneTree (enSembl)ENSG00000131379
Phylogenetic Trees/Animal Genes : TreeFamC3orf20
HOVERGENQ8ND61
HOGENOMQ8ND61
Homologs : HomoloGeneC3orf20
Homology/Alignments : Family Browser (UCSC)C3orf20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf20
dbVarC3orf20
ClinVarC3orf20
1000_GenomesC3orf20 
Exome Variant ServerC3orf20
ExAC (Exome Aggregation Consortium)C3orf20 (select the gene name)
Genetic variants : HAPMAP84077
Genomic Variants (DGV)C3orf20 [DGVbeta]
DECIPHERC3orf20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf20 
Mutations
ICGC Data PortalC3orf20 
TCGA Data PortalC3orf20 
Broad Tumor PortalC3orf20
OASIS PortalC3orf20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf20
DgiDB (Drug Gene Interaction Database)C3orf20
DoCM (Curated mutations)C3orf20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf20 (select a term)
intoGenC3orf20
Cancer3DC3orf20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf20
Genetic Testing Registry C3orf20
NextProtQ8ND61 [Medical]
TSGene84077
GENETestsC3orf20
Target ValidationC3orf20
Huge Navigator C3orf20 [HugePedia]
snp3D : Map Gene to Disease84077
BioCentury BCIQC3orf20
ClinGenC3orf20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84077
Chemical/Pharm GKB GenePA134977176
Clinical trialC3orf20
Miscellaneous
canSAR (ICR)C3orf20 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf20
EVEXC3orf20
GoPubMedC3orf20
iHOPC3orf20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:19 CEST 2017

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