Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C3orf22 (chromosome 3 open reading frame 22)

Identity

Alias_symbol (synonym)MGC34728
Other alias-
HGNC (Hugo) C3orf22
LocusID (NCBI) 152065
Atlas_Id 61179
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 126549676 and ends at 126558965 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf22   28534
Cards
Entrez_Gene (NCBI)C3orf22  152065  chromosome 3 open reading frame 22
Aliases
GeneCards (Weizmann)C3orf22
Ensembl hg19 (Hinxton)ENSG00000180697 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180697 [Gene_View]  chr3:126549676-126558965 [Contig_View]  C3orf22 [Vega]
ICGC DataPortalENSG00000180697
TCGA cBioPortalC3orf22
AceView (NCBI)C3orf22
Genatlas (Paris)C3orf22
WikiGenes152065
SOURCE (Princeton)C3orf22
Genetics Home Reference (NIH)C3orf22
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf22  -     chr3:126549676-126558965 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf22  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblC3orf22 - 3q21.3 [CytoView hg19]  C3orf22 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIC3orf22 [Mapview hg19]  C3orf22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097841 BC032025 DB055549
RefSeq transcript (Entrez)NM_152533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf22
Cluster EST : UnigeneHs.178210 [ NCBI ]
CGAP (NCI)Hs.178210
Alternative Splicing GalleryENSG00000180697
Gene ExpressionC3orf22 [ NCBI-GEO ]   C3orf22 [ EBI - ARRAY_EXPRESS ]   C3orf22 [ SEEK ]   C3orf22 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152065
GTEX Portal (Tissue expression)C3orf22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5N4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5N4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5N4
Splice isoforms : SwissVarQ8N5N4
PhosPhoSitePlusQ8N5N4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf22
DMDM Disease mutations152065
Blocks (Seattle)C3orf22
SuperfamilyQ8N5N4
Human Protein AtlasENSG00000180697
Peptide AtlasQ8N5N4
HPRD14585
IPIIPI00166880   IPI00796623   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5N4
IntAct (EBI)Q8N5N4
FunCoupENSG00000180697
BioGRIDC3orf22
STRING (EMBL)C3orf22
ZODIACC3orf22
Ontologies - Pathways
QuickGOQ8N5N4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf22
Atlas of Cancer Signalling NetworkC3orf22
Wikipedia pathwaysC3orf22
Orthology - Evolution
OrthoDB152065
GeneTree (enSembl)ENSG00000180697
Phylogenetic Trees/Animal Genes : TreeFamC3orf22
HOVERGENQ8N5N4
HOGENOMQ8N5N4
Homologs : HomoloGeneC3orf22
Homology/Alignments : Family Browser (UCSC)C3orf22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf22
dbVarC3orf22
ClinVarC3orf22
1000_GenomesC3orf22 
Exome Variant ServerC3orf22
ExAC (Exome Aggregation Consortium)C3orf22 (select the gene name)
Genetic variants : HAPMAP152065
Genomic Variants (DGV)C3orf22 [DGVbeta]
DECIPHERC3orf22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf22 
Mutations
ICGC Data PortalC3orf22 
TCGA Data PortalC3orf22 
Broad Tumor PortalC3orf22
OASIS PortalC3orf22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf22
DgiDB (Drug Gene Interaction Database)C3orf22
DoCM (Curated mutations)C3orf22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf22 (select a term)
intoGenC3orf22
Cancer3DC3orf22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf22
Genetic Testing Registry C3orf22
NextProtQ8N5N4 [Medical]
TSGene152065
GENETestsC3orf22
Target ValidationC3orf22
Huge Navigator C3orf22 [HugePedia]
snp3D : Map Gene to Disease152065
BioCentury BCIQC3orf22
ClinGenC3orf22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152065
Chemical/Pharm GKB GenePA142672383
Clinical trialC3orf22
Miscellaneous
canSAR (ICR)C3orf22 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf22
EVEXC3orf22
GoPubMedC3orf22
iHOPC3orf22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:13 CEST 2017

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