Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C3orf30 (chromosome 3 open reading frame 30)

Identity

Alias_symbol (synonym)FLJ32859
Other aliasTSCPA
HGNC (Hugo) C3orf30
LocusID (NCBI) 152405
Atlas_Id 61180
Location 3q13.32  [Link to chromosome band 3q13]
Location_base_pair Starts at 119146150 and ends at 119151455 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf30   26553
Cards
Entrez_Gene (NCBI)C3orf30  152405  chromosome 3 open reading frame 30
AliasesTSCPA
GeneCards (Weizmann)C3orf30
Ensembl hg19 (Hinxton)ENSG00000163424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163424 [Gene_View]  chr3:119146150-119151455 [Contig_View]  C3orf30 [Vega]
ICGC DataPortalENSG00000163424
TCGA cBioPortalC3orf30
AceView (NCBI)C3orf30
Genatlas (Paris)C3orf30
WikiGenes152405
SOURCE (Princeton)C3orf30
Genetics Home Reference (NIH)C3orf30
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf30  -     chr3:119146150-119151455 +  3q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf30  -     3q13.32   [Description]    (hg19-Feb_2009)
EnsemblC3orf30 - 3q13.32 [CytoView hg19]  C3orf30 - 3q13.32 [CytoView hg38]
Mapping of homologs : NCBIC3orf30 [Mapview hg19]  C3orf30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057421 BC130475 BC144197 DW009752
RefSeq transcript (Entrez)NM_152539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf30
Cluster EST : UnigeneHs.730099 [ NCBI ]
CGAP (NCI)Hs.730099
Alternative Splicing GalleryENSG00000163424
Gene ExpressionC3orf30 [ NCBI-GEO ]   C3orf30 [ EBI - ARRAY_EXPRESS ]   C3orf30 [ SEEK ]   C3orf30 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152405
GTEX Portal (Tissue expression)C3orf30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M34
Splice isoforms : SwissVarQ96M34
PhosPhoSitePlusQ96M34
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf30
DMDM Disease mutations152405
Blocks (Seattle)C3orf30
SuperfamilyQ96M34
Human Protein AtlasENSG00000163424
Peptide AtlasQ96M34
HPRD08146
IPIIPI00065253   IPI00945852   IPI00794655   IPI00945648   IPI00946022   
Protein Interaction databases
DIP (DOE-UCLA)Q96M34
IntAct (EBI)Q96M34
FunCoupENSG00000163424
BioGRIDC3orf30
STRING (EMBL)C3orf30
ZODIACC3orf30
Ontologies - Pathways
QuickGOQ96M34
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf30
Atlas of Cancer Signalling NetworkC3orf30
Wikipedia pathwaysC3orf30
Orthology - Evolution
OrthoDB152405
GeneTree (enSembl)ENSG00000163424
Phylogenetic Trees/Animal Genes : TreeFamC3orf30
HOVERGENQ96M34
HOGENOMQ96M34
Homologs : HomoloGeneC3orf30
Homology/Alignments : Family Browser (UCSC)C3orf30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf30
dbVarC3orf30
ClinVarC3orf30
1000_GenomesC3orf30 
Exome Variant ServerC3orf30
ExAC (Exome Aggregation Consortium)C3orf30 (select the gene name)
Genetic variants : HAPMAP152405
Genomic Variants (DGV)C3orf30 [DGVbeta]
DECIPHERC3orf30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf30 
Mutations
ICGC Data PortalC3orf30 
TCGA Data PortalC3orf30 
Broad Tumor PortalC3orf30
OASIS PortalC3orf30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf30
DgiDB (Drug Gene Interaction Database)C3orf30
DoCM (Curated mutations)C3orf30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf30 (select a term)
intoGenC3orf30
Cancer3DC3orf30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf30
Genetic Testing Registry C3orf30
NextProtQ96M34 [Medical]
TSGene152405
GENETestsC3orf30
Target ValidationC3orf30
Huge Navigator C3orf30 [HugePedia]
snp3D : Map Gene to Disease152405
BioCentury BCIQC3orf30
ClinGenC3orf30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152405
Chemical/Pharm GKB GenePA142672391
Clinical trialC3orf30
Miscellaneous
canSAR (ICR)C3orf30 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf30
EVEXC3orf30
GoPubMedC3orf30
iHOPC3orf30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.