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C3orf33 (chromosome 3 open reading frame 33)

Identity

Alias_symbol (synonym)FLJ31139
AC3-33
Other alias
HGNC (Hugo) C3orf33
LocusID (NCBI) 285315
Atlas_Id 61181
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 155762612 and ends at 155806287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLCH1 (3q25.31) / C3orf33 (3q25.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf33   26434
Cards
Entrez_Gene (NCBI)C3orf33  285315  chromosome 3 open reading frame 33
AliasesAC3-33
GeneCards (Weizmann)C3orf33
Ensembl hg19 (Hinxton)ENSG00000174928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174928 [Gene_View]  chr3:155762612-155806287 [Contig_View]  C3orf33 [Vega]
ICGC DataPortalENSG00000174928
TCGA cBioPortalC3orf33
AceView (NCBI)C3orf33
Genatlas (Paris)C3orf33
WikiGenes285315
SOURCE (Princeton)C3orf33
Genetics Home Reference (NIH)C3orf33
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf33  -     chr3:155762612-155806287 -  3q25.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf33  -     3q25.31   [Description]    (hg19-Feb_2009)
EnsemblC3orf33 - 3q25.31 [CytoView hg19]  C3orf33 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBIC3orf33 [Mapview hg19]  C3orf33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF115515 AK055701 AK289890 AL832165 BC042198
RefSeq transcript (Entrez)NM_001308229 NM_173657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf33
Cluster EST : UnigeneHs.350846 [ NCBI ]
CGAP (NCI)Hs.350846
Alternative Splicing GalleryENSG00000174928
Gene ExpressionC3orf33 [ NCBI-GEO ]   C3orf33 [ EBI - ARRAY_EXPRESS ]   C3orf33 [ SEEK ]   C3orf33 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285315
GTEX Portal (Tissue expression)C3orf33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1S2
Splice isoforms : SwissVarQ6P1S2
PhosPhoSitePlusQ6P1S2
Domains : Interpro (EBI)Staphylococal_nuclease_OB-fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf33
DMDM Disease mutations285315
Blocks (Seattle)C3orf33
SuperfamilyQ6P1S2
Human Protein AtlasENSG00000174928
Peptide AtlasQ6P1S2
HPRD08095
IPIIPI00418301   IPI01014742   IPI00945963   IPI00945856   IPI00945451   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1S2
IntAct (EBI)Q6P1S2
FunCoupENSG00000174928
BioGRIDC3orf33
STRING (EMBL)C3orf33
ZODIACC3orf33
Ontologies - Pathways
QuickGOQ6P1S2
Ontology : AmiGOextracellular space  integral component of membrane  regulation of sequence-specific DNA binding transcription factor activity  negative regulation of ERK1 and ERK2 cascade  
Ontology : EGO-EBIextracellular space  integral component of membrane  regulation of sequence-specific DNA binding transcription factor activity  negative regulation of ERK1 and ERK2 cascade  
NDEx NetworkC3orf33
Atlas of Cancer Signalling NetworkC3orf33
Wikipedia pathwaysC3orf33
Orthology - Evolution
OrthoDB285315
GeneTree (enSembl)ENSG00000174928
Phylogenetic Trees/Animal Genes : TreeFamC3orf33
HOVERGENQ6P1S2
HOGENOMQ6P1S2
Homologs : HomoloGeneC3orf33
Homology/Alignments : Family Browser (UCSC)C3orf33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf33
dbVarC3orf33
ClinVarC3orf33
1000_GenomesC3orf33 
Exome Variant ServerC3orf33
ExAC (Exome Aggregation Consortium)C3orf33 (select the gene name)
Genetic variants : HAPMAP285315
Genomic Variants (DGV)C3orf33 [DGVbeta]
DECIPHERC3orf33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf33 
Mutations
ICGC Data PortalC3orf33 
TCGA Data PortalC3orf33 
Broad Tumor PortalC3orf33
OASIS PortalC3orf33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf33
DgiDB (Drug Gene Interaction Database)C3orf33
DoCM (Curated mutations)C3orf33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf33 (select a term)
intoGenC3orf33
Cancer3DC3orf33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf33
Genetic Testing Registry C3orf33
NextProtQ6P1S2 [Medical]
TSGene285315
GENETestsC3orf33
Target ValidationC3orf33
Huge Navigator C3orf33 [HugePedia]
snp3D : Map Gene to Disease285315
BioCentury BCIQC3orf33
ClinGenC3orf33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285315
Chemical/Pharm GKB GenePA142672394
Clinical trialC3orf33
Miscellaneous
canSAR (ICR)C3orf33 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf33
EVEXC3orf33
GoPubMedC3orf33
iHOPC3orf33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:19 CEST 2017

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