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C3orf35 (chromosome 3 open reading frame 35)

Identity

Alias_symbol (synonym)APRG1
Other alias
HGNC (Hugo) C3orf35
LocusID (NCBI) 339883
Atlas_Id 45976
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 37411138 and ends at 37418374 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf35   24082
Cards
Entrez_Gene (NCBI)C3orf35  339883  chromosome 3 open reading frame 35
AliasesAPRG1
GeneCards (Weizmann)C3orf35
Ensembl hg19 (Hinxton)ENSG00000198590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198590 [Gene_View]  chr3:37411138-37418374 [Contig_View]  C3orf35 [Vega]
ICGC DataPortalENSG00000198590
TCGA cBioPortalC3orf35
AceView (NCBI)C3orf35
Genatlas (Paris)C3orf35
WikiGenes339883
SOURCE (Princeton)C3orf35
Genetics Home Reference (NIH)C3orf35
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf35  -     chr3:37411138-37418374 +  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf35  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblC3orf35 - 3p22.2 [CytoView hg19]  C3orf35 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf35 [Mapview hg19]  C3orf35 [Mapview hg38]
OMIM611429   
Gene and transcription
Genbank (Entrez)AJ493599 AJ493600 AJ493601 AJ493602 AJ493603
RefSeq transcript (Entrez)NM_001302831 NM_001302832 NM_178339 NM_178342 NM_178344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf35
Cluster EST : UnigeneHs.475945 [ NCBI ]
CGAP (NCI)Hs.475945
Alternative Splicing GalleryENSG00000198590
Gene ExpressionC3orf35 [ NCBI-GEO ]   C3orf35 [ EBI - ARRAY_EXPRESS ]   C3orf35 [ SEEK ]   C3orf35 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339883
GTEX Portal (Tissue expression)C3orf35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVJ8
Splice isoforms : SwissVarQ8IVJ8
PhosPhoSitePlusQ8IVJ8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf35
DMDM Disease mutations339883
Blocks (Seattle)C3orf35
SuperfamilyQ8IVJ8
Human Protein AtlasENSG00000198590
Peptide AtlasQ8IVJ8
HPRD16502
IPIIPI00256535   IPI00883972   IPI00217034   IPI00216668   IPI00217035   IPI00217036   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVJ8
IntAct (EBI)Q8IVJ8
FunCoupENSG00000198590
BioGRIDC3orf35
STRING (EMBL)C3orf35
ZODIACC3orf35
Ontologies - Pathways
QuickGOQ8IVJ8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC3orf35
Atlas of Cancer Signalling NetworkC3orf35
Wikipedia pathwaysC3orf35
Orthology - Evolution
OrthoDB339883
GeneTree (enSembl)ENSG00000198590
Phylogenetic Trees/Animal Genes : TreeFamC3orf35
HOVERGENQ8IVJ8
HOGENOMQ8IVJ8
Homologs : HomoloGeneC3orf35
Homology/Alignments : Family Browser (UCSC)C3orf35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf35
dbVarC3orf35
ClinVarC3orf35
1000_GenomesC3orf35 
Exome Variant ServerC3orf35
ExAC (Exome Aggregation Consortium)C3orf35 (select the gene name)
Genetic variants : HAPMAP339883
Genomic Variants (DGV)C3orf35 [DGVbeta]
DECIPHERC3orf35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf35 
Mutations
ICGC Data PortalC3orf35 
TCGA Data PortalC3orf35 
Broad Tumor PortalC3orf35
OASIS PortalC3orf35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf35
DgiDB (Drug Gene Interaction Database)C3orf35
DoCM (Curated mutations)C3orf35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf35 (select a term)
intoGenC3orf35
Cancer3DC3orf35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611429   
Orphanet
MedgenC3orf35
Genetic Testing Registry C3orf35
NextProtQ8IVJ8 [Medical]
TSGene339883
GENETestsC3orf35
Target ValidationC3orf35
Huge Navigator C3orf35 [HugePedia]
snp3D : Map Gene to Disease339883
BioCentury BCIQC3orf35
ClinGenC3orf35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339883
Chemical/Pharm GKB GenePA142672396
Clinical trialC3orf35
Miscellaneous
canSAR (ICR)C3orf35 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf35
EVEXC3orf35
GoPubMedC3orf35
iHOPC3orf35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:31 CEST 2017

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