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C3orf36 (chromosome 3 open reading frame 36)

Identity

Alias_symbol (synonym)FLJ22173
Other alias-
HGNC (Hugo) C3orf36
LocusID (NCBI) 80111
Atlas_Id 54172
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 133646990 and ends at 133648656 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMCC1 (3q22.1) / C3orf36 (3q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)C3orf36   26170
Cards
Entrez_Gene (NCBI)C3orf36  80111  chromosome 3 open reading frame 36
Aliases
GeneCards (Weizmann)C3orf36
Ensembl hg19 (Hinxton)ENSG00000221972 [Gene_View]  chr3:133646990-133648656 [Contig_View]  C3orf36 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221972 [Gene_View]  chr3:133646990-133648656 [Contig_View]  C3orf36 [Vega]
ICGC DataPortalENSG00000221972
TCGA cBioPortalC3orf36
AceView (NCBI)C3orf36
Genatlas (Paris)C3orf36
WikiGenes80111
SOURCE (Princeton)C3orf36
Genetics Home Reference (NIH)C3orf36
Genomic and cartography
GoldenPath hg19 (UCSC)C3orf36  -     chr3:133646990-133648656 -  3q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C3orf36  -     3q22.1   [Description]    (hg38-Dec_2013)
EnsemblC3orf36 - 3q22.1 [CytoView hg19]  C3orf36 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIC3orf36 [Mapview hg19]  C3orf36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025826 AK225383 BC051274 BC064502 BC082257
RefSeq transcript (Entrez)NM_025041
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)C3orf36
Cluster EST : UnigeneHs.287691 [ NCBI ]
CGAP (NCI)Hs.287691
Alternative Splicing GalleryENSG00000221972
Gene ExpressionC3orf36 [ NCBI-GEO ]   C3orf36 [ EBI - ARRAY_EXPRESS ]   C3orf36 [ SEEK ]   C3orf36 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80111
GTEX Portal (Tissue expression)C3orf36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXR2
Splice isoforms : SwissVarQ3SXR2
PhosPhoSitePlusQ3SXR2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf36
DMDM Disease mutations80111
Blocks (Seattle)C3orf36
SuperfamilyQ3SXR2
Human Protein AtlasENSG00000221972
Peptide AtlasQ3SXR2
HPRD07981
IPIIPI00017902   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXR2
IntAct (EBI)Q3SXR2
FunCoupENSG00000221972
BioGRIDC3orf36
STRING (EMBL)C3orf36
ZODIACC3orf36
Ontologies - Pathways
QuickGOQ3SXR2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf36
Atlas of Cancer Signalling NetworkC3orf36
Wikipedia pathwaysC3orf36
Orthology - Evolution
OrthoDB80111
GeneTree (enSembl)ENSG00000221972
Phylogenetic Trees/Animal Genes : TreeFamC3orf36
HOVERGENQ3SXR2
HOGENOMQ3SXR2
Homologs : HomoloGeneC3orf36
Homology/Alignments : Family Browser (UCSC)C3orf36
Gene fusions - Rearrangements
Fusion : MitelmanTMCC1/C3orf36 [3q22.1/3q22.1]  [t(3;3)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf36
dbVarC3orf36
ClinVarC3orf36
1000_GenomesC3orf36 
Exome Variant ServerC3orf36
ExAC (Exome Aggregation Consortium)C3orf36 (select the gene name)
Genetic variants : HAPMAP80111
Genomic Variants (DGV)C3orf36 [DGVbeta]
DECIPHER (Syndromes)3:133646990-133648656  ENSG00000221972
CONAN: Copy Number AnalysisC3orf36 
Mutations
ICGC Data PortalC3orf36 
TCGA Data PortalC3orf36 
Broad Tumor PortalC3orf36
OASIS PortalC3orf36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf36
DgiDB (Drug Gene Interaction Database)C3orf36
DoCM (Curated mutations)C3orf36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf36 (select a term)
intoGenC3orf36
Cancer3DC3orf36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf36
Genetic Testing Registry C3orf36
NextProtQ3SXR2 [Medical]
TSGene80111
GENETestsC3orf36
Huge Navigator C3orf36 [HugePedia]
snp3D : Map Gene to Disease80111
BioCentury BCIQC3orf36
ClinGenC3orf36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80111
Chemical/Pharm GKB GenePA142672397
Clinical trialC3orf36
Miscellaneous
canSAR (ICR)C3orf36 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf36
EVEXC3orf36
GoPubMedC3orf36
iHOPC3orf36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:15 CET 2017

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