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C3orf38 (chromosome 3 open reading frame 38)

Identity

Alias_symbol (synonym)MGC26717
Other alias-
HGNC (Hugo) C3orf38
LocusID (NCBI) 285237
Atlas_Id 61182
Location 3p11.1  [Link to chromosome band 3p11]
Location_base_pair Starts at 88149743 and ends at 88157965 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf38   28384
Cards
Entrez_Gene (NCBI)C3orf38  285237  chromosome 3 open reading frame 38
Aliases
GeneCards (Weizmann)C3orf38
Ensembl hg19 (Hinxton)ENSG00000179021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179021 [Gene_View]  chr3:88149743-88157965 [Contig_View]  C3orf38 [Vega]
ICGC DataPortalENSG00000179021
TCGA cBioPortalC3orf38
AceView (NCBI)C3orf38
Genatlas (Paris)C3orf38
WikiGenes285237
SOURCE (Princeton)C3orf38
Genetics Home Reference (NIH)C3orf38
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf38  -     chr3:88149743-88157965 +  3p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf38  -     3p11.1   [Description]    (hg19-Feb_2009)
EnsemblC3orf38 - 3p11.1 [CytoView hg19]  C3orf38 - 3p11.1 [CytoView hg38]
Mapping of homologs : NCBIC3orf38 [Mapview hg19]  C3orf38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK297719 AK313547 AL832398 BC016013 BC024188
RefSeq transcript (Entrez)NM_173824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf38
Cluster EST : UnigeneHs.518099 [ NCBI ]
CGAP (NCI)Hs.518099
Alternative Splicing GalleryENSG00000179021
Gene ExpressionC3orf38 [ NCBI-GEO ]   C3orf38 [ EBI - ARRAY_EXPRESS ]   C3orf38 [ SEEK ]   C3orf38 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285237
GTEX Portal (Tissue expression)C3orf38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JPI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JPI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JPI3
Splice isoforms : SwissVarQ5JPI3
PhosPhoSitePlusQ5JPI3
Domains : Interpro (EBI)NTF2-like_dom    UPF_C3orf38   
Domain families : Pfam (Sanger)DUF4518 (PF15008)   
Domain families : Pfam (NCBI)pfam15008   
Conserved Domain (NCBI)C3orf38
DMDM Disease mutations285237
Blocks (Seattle)C3orf38
SuperfamilyQ5JPI3
Human Protein AtlasENSG00000179021
Peptide AtlasQ5JPI3
HPRD14509
IPIIPI00152311   IPI00743655   IPI00908825   
Protein Interaction databases
DIP (DOE-UCLA)Q5JPI3
IntAct (EBI)Q5JPI3
FunCoupENSG00000179021
BioGRIDC3orf38
STRING (EMBL)C3orf38
ZODIACC3orf38
Ontologies - Pathways
QuickGOQ5JPI3
Ontology : AmiGOapoptotic process  
Ontology : EGO-EBIapoptotic process  
NDEx NetworkC3orf38
Atlas of Cancer Signalling NetworkC3orf38
Wikipedia pathwaysC3orf38
Orthology - Evolution
OrthoDB285237
GeneTree (enSembl)ENSG00000179021
Phylogenetic Trees/Animal Genes : TreeFamC3orf38
HOVERGENQ5JPI3
HOGENOMQ5JPI3
Homologs : HomoloGeneC3orf38
Homology/Alignments : Family Browser (UCSC)C3orf38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf38
dbVarC3orf38
ClinVarC3orf38
1000_GenomesC3orf38 
Exome Variant ServerC3orf38
ExAC (Exome Aggregation Consortium)C3orf38 (select the gene name)
Genetic variants : HAPMAP285237
Genomic Variants (DGV)C3orf38 [DGVbeta]
DECIPHERC3orf38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf38 
Mutations
ICGC Data PortalC3orf38 
TCGA Data PortalC3orf38 
Broad Tumor PortalC3orf38
OASIS PortalC3orf38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf38
DgiDB (Drug Gene Interaction Database)C3orf38
DoCM (Curated mutations)C3orf38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf38 (select a term)
intoGenC3orf38
Cancer3DC3orf38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf38
Genetic Testing Registry C3orf38
NextProtQ5JPI3 [Medical]
TSGene285237
GENETestsC3orf38
Target ValidationC3orf38
Huge Navigator C3orf38 [HugePedia]
snp3D : Map Gene to Disease285237
BioCentury BCIQC3orf38
ClinGenC3orf38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285237
Chemical/Pharm GKB GenePA142672399
Clinical trialC3orf38
Miscellaneous
canSAR (ICR)C3orf38 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf38
EVEXC3orf38
GoPubMedC3orf38
iHOPC3orf38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:14 CEST 2017

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