Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C3orf38 (chromosome 3 open reading frame 38)

Identity

Alias (NCBI)-
HGNC (Hugo) C3orf38
HGNC Alias symbMGC26717
LocusID (NCBI) 285237
Atlas_Id 61182
Location 3p11.1  [Link to chromosome band 3p11]
Location_base_pair Starts at 88149959 and ends at 88157965 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C3orf38   28384
Cards
Entrez_Gene (NCBI)C3orf38    chromosome 3 open reading frame 38
Aliases
GeneCards (Weizmann)C3orf38
Ensembl hg19 (Hinxton)ENSG00000179021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179021 [Gene_View]  ENSG00000179021 [Sequence]  chr3:88149959-88157965 [Contig_View]  C3orf38 [Vega]
ICGC DataPortalENSG00000179021
TCGA cBioPortalC3orf38
AceView (NCBI)C3orf38
Genatlas (Paris)C3orf38
SOURCE (Princeton)C3orf38
Genetics Home Reference (NIH)C3orf38
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf38  -     chr3:88149959-88157965 +  3p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf38  -     3p11.1   [Description]    (hg19-Feb_2009)
GoldenPathC3orf38 - 3p11.1 [CytoView hg19]  C3orf38 - 3p11.1 [CytoView hg38]
ImmunoBaseENSG00000179021
Genome Data Viewer NCBIC3orf38 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK297719 AK313547 AL832398 BC016013 BC024188
RefSeq transcript (Entrez)NM_173824
Consensus coding sequences : CCDS (NCBI)C3orf38
Gene ExpressionC3orf38 [ NCBI-GEO ]   C3orf38 [ EBI - ARRAY_EXPRESS ]   C3orf38 [ SEEK ]   C3orf38 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf38 [ Firebrowse - Broad ]
GenevisibleExpression of C3orf38 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285237
GTEX Portal (Tissue expression)C3orf38
Human Protein AtlasENSG00000179021-C3orf38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JPI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JPI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JPI3
PhosPhoSitePlusQ5JPI3
Domains : Interpro (EBI)NTF2-like_dom_sf    UPF_C3orf38   
Domain families : Pfam (Sanger)DUF4518 (PF15008)   
Domain families : Pfam (NCBI)pfam15008   
Conserved Domain (NCBI)C3orf38
SuperfamilyQ5JPI3
AlphaFold pdb e-kbQ5JPI3   
Human Protein Atlas [tissue]ENSG00000179021-C3orf38 [tissue]
HPRD14509
Protein Interaction databases
DIP (DOE-UCLA)Q5JPI3
IntAct (EBI)Q5JPI3
BioGRIDC3orf38
STRING (EMBL)C3orf38
ZODIACC3orf38
Ontologies - Pathways
QuickGOQ5JPI3
Ontology : AmiGOmolecular_function  nucleus  apoptotic process  positive regulation of apoptotic process  
Ontology : EGO-EBImolecular_function  nucleus  apoptotic process  positive regulation of apoptotic process  
NDEx NetworkC3orf38
Atlas of Cancer Signalling NetworkC3orf38
Wikipedia pathwaysC3orf38
Orthology - Evolution
OrthoDB285237
GeneTree (enSembl)ENSG00000179021
Phylogenetic Trees/Animal Genes : TreeFamC3orf38
Homologs : HomoloGeneC3orf38
Homology/Alignments : Family Browser (UCSC)C3orf38
Gene fusions - Rearrangements
Fusion : QuiverC3orf38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf38
dbVarC3orf38
ClinVarC3orf38
MonarchC3orf38
1000_GenomesC3orf38 
Exome Variant ServerC3orf38
GNOMAD BrowserENSG00000179021
Varsome BrowserC3orf38
ACMGC3orf38 variants
VarityQ5JPI3
Genomic Variants (DGV)C3orf38 [DGVbeta]
DECIPHERC3orf38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf38 
Mutations
ICGC Data PortalC3orf38 
TCGA Data PortalC3orf38 
Broad Tumor PortalC3orf38
OASIS PortalC3orf38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf38  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC3orf38
Mutations and Diseases : HGMDC3orf38
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC3orf38
DgiDB (Drug Gene Interaction Database)C3orf38
DoCM (Curated mutations)C3orf38
CIViC (Clinical Interpretations of Variants in Cancer)C3orf38
Cancer3DC3orf38
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC3orf38
MedgenC3orf38
Genetic Testing Registry C3orf38
NextProtQ5JPI3 [Medical]
GENETestsC3orf38
Target ValidationC3orf38
Huge Navigator C3orf38 [HugePedia]
ClinGenC3orf38
Clinical trials, drugs, therapy
MyCancerGenomeC3orf38
Protein Interactions : CTDC3orf38
Pharm GKB GenePA142672399
PharosQ5JPI3
Clinical trialC3orf38
Miscellaneous
canSAR (ICR)C3orf38
HarmonizomeC3orf38
ARCHS4C3orf38
DataMed IndexC3orf38
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC3orf38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Jan 16 18:46:55 CET 2022

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.