Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C3orf49 (chromosome 3 open reading frame 49)

Identity

Other alias-
HGNC (Hugo) C3orf49
LocusID (NCBI) 132200
Atlas_Id 61183
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 63819396 and ends at 63848636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C3orf49 (3p14.1) / BDNF-AS (11p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C3orf49   25190
Cards
Entrez_Gene (NCBI)C3orf49  132200  chromosome 3 open reading frame 49
Aliases
GeneCards (Weizmann)C3orf49
Ensembl hg19 (Hinxton)ENSG00000163632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163632 [Gene_View]  ENSG00000163632 [Sequence]  chr3:63819396-63848636 [Contig_View]  C3orf49 [Vega]
ICGC DataPortalENSG00000163632
TCGA cBioPortalC3orf49
AceView (NCBI)C3orf49
Genatlas (Paris)C3orf49
WikiGenes132200
SOURCE (Princeton)C3orf49
Genetics Home Reference (NIH)C3orf49
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf49  -     chr3:63819396-63848636 +  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf49  -     3p14.1   [Description]    (hg19-Feb_2009)
EnsemblC3orf49 - 3p14.1 [CytoView hg19]  C3orf49 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBIC3orf49 [Mapview hg19]  C3orf49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC015210 CD636567
RefSeq transcript (Entrez)NM_138808
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf49
Cluster EST : UnigeneHs.506386 [ NCBI ]
CGAP (NCI)Hs.506386
Alternative Splicing GalleryENSG00000163632
Gene ExpressionC3orf49 [ NCBI-GEO ]   C3orf49 [ EBI - ARRAY_EXPRESS ]   C3orf49 [ SEEK ]   C3orf49 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132200
GTEX Portal (Tissue expression)C3orf49
Human Protein AtlasENSG00000163632-C3orf49 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BT1
Splice isoforms : SwissVarQ96BT1
PhosPhoSitePlusQ96BT1
Domains : Interpro (EBI)Synaptobrevin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf49
DMDM Disease mutations132200
Blocks (Seattle)C3orf49
SuperfamilyQ96BT1
Human Protein Atlas [tissue]ENSG00000163632-C3orf49 [tissue]
Peptide AtlasQ96BT1
IPIIPI00069524   
Protein Interaction databases
DIP (DOE-UCLA)Q96BT1
IntAct (EBI)Q96BT1
FunCoupENSG00000163632
BioGRIDC3orf49
STRING (EMBL)C3orf49
ZODIACC3orf49
Ontologies - Pathways
QuickGOQ96BT1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf49
Atlas of Cancer Signalling NetworkC3orf49
Wikipedia pathwaysC3orf49
Orthology - Evolution
OrthoDB132200
GeneTree (enSembl)ENSG00000163632
Phylogenetic Trees/Animal Genes : TreeFamC3orf49
HOGENOMQ96BT1
Homologs : HomoloGeneC3orf49
Homology/Alignments : Family Browser (UCSC)C3orf49
Gene fusions - Rearrangements
Fusion : QuiverC3orf49
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf49
dbVarC3orf49
ClinVarC3orf49
1000_GenomesC3orf49 
Exome Variant ServerC3orf49
ExAC (Exome Aggregation Consortium)ENSG00000163632
GNOMAD BrowserENSG00000163632
Varsome BrowserC3orf49
Genetic variants : HAPMAP132200
Genomic Variants (DGV)C3orf49 [DGVbeta]
DECIPHERC3orf49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf49 
Mutations
ICGC Data PortalC3orf49 
TCGA Data PortalC3orf49 
Broad Tumor PortalC3orf49
OASIS PortalC3orf49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf49
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch C3orf49
DgiDB (Drug Gene Interaction Database)C3orf49
DoCM (Curated mutations)C3orf49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf49 (select a term)
intoGenC3orf49
Cancer3DC3orf49(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC3orf49
MedgenC3orf49
Genetic Testing Registry C3orf49
NextProtQ96BT1 [Medical]
TSGene132200
GENETestsC3orf49
Target ValidationC3orf49
Huge Navigator C3orf49 [HugePedia]
snp3D : Map Gene to Disease132200
BioCentury BCIQC3orf49
ClinGenC3orf49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132200
Chemical/Pharm GKB GenePA143485326
Clinical trialC3orf49
Miscellaneous
canSAR (ICR)C3orf49 (select the gene name)
DataMed IndexC3orf49
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf49
EVEXC3orf49
GoPubMedC3orf49
iHOPC3orf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Feb 14 14:58:13 CET 2019
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