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C3orf52 (chromosome 3 open reading frame 52)

Identity

Alias_symbol (synonym)FLJ23186
TTMP
Other alias
HGNC (Hugo) C3orf52
LocusID (NCBI) 79669
Atlas_Id 61184
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112086335 and ends at 112118226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C3orf52 (3q13.2) / BAZ2B (2q24.2)C3orf52 (3q13.2) / GCSAM (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf52   26255
Cards
Entrez_Gene (NCBI)C3orf52  79669  chromosome 3 open reading frame 52
AliasesTTMP
GeneCards (Weizmann)C3orf52
Ensembl hg19 (Hinxton)ENSG00000114529 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114529 [Gene_View]  chr3:112086335-112118226 [Contig_View]  C3orf52 [Vega]
ICGC DataPortalENSG00000114529
TCGA cBioPortalC3orf52
AceView (NCBI)C3orf52
Genatlas (Paris)C3orf52
WikiGenes79669
SOURCE (Princeton)C3orf52
Genetics Home Reference (NIH)C3orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf52  -     chr3:112086335-112118226 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf52  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblC3orf52 - 3q13.2 [CytoView hg19]  C3orf52 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf52 [Mapview hg19]  C3orf52 [Mapview hg38]
OMIM611956   
Gene and transcription
Genbank (Entrez)AA215562 AK026839 AK298076 AK303588 AY830714
RefSeq transcript (Entrez)NM_001171747 NM_024616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf52
Cluster EST : UnigeneHs.434247 [ NCBI ]
CGAP (NCI)Hs.434247
Alternative Splicing GalleryENSG00000114529
Gene ExpressionC3orf52 [ NCBI-GEO ]   C3orf52 [ EBI - ARRAY_EXPRESS ]   C3orf52 [ SEEK ]   C3orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79669
GTEX Portal (Tissue expression)C3orf52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BVD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BVD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BVD1
Splice isoforms : SwissVarQ5BVD1
PhosPhoSitePlusQ5BVD1
Domains : Interpro (EBI)TTMP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf52
DMDM Disease mutations79669
Blocks (Seattle)C3orf52
SuperfamilyQ5BVD1
Human Protein AtlasENSG00000114529
Peptide AtlasQ5BVD1
HPRD08018
IPIIPI00303046   IPI00910739   IPI00917464   
Protein Interaction databases
DIP (DOE-UCLA)Q5BVD1
IntAct (EBI)Q5BVD1
FunCoupENSG00000114529
BioGRIDC3orf52
STRING (EMBL)C3orf52
ZODIACC3orf52
Ontologies - Pathways
QuickGOQ5BVD1
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkC3orf52
Atlas of Cancer Signalling NetworkC3orf52
Wikipedia pathwaysC3orf52
Orthology - Evolution
OrthoDB79669
GeneTree (enSembl)ENSG00000114529
Phylogenetic Trees/Animal Genes : TreeFamC3orf52
HOVERGENQ5BVD1
HOGENOMQ5BVD1
Homologs : HomoloGeneC3orf52
Homology/Alignments : Family Browser (UCSC)C3orf52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf52
dbVarC3orf52
ClinVarC3orf52
1000_GenomesC3orf52 
Exome Variant ServerC3orf52
ExAC (Exome Aggregation Consortium)C3orf52 (select the gene name)
Genetic variants : HAPMAP79669
Genomic Variants (DGV)C3orf52 [DGVbeta]
DECIPHERC3orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf52 
Mutations
ICGC Data PortalC3orf52 
TCGA Data PortalC3orf52 
Broad Tumor PortalC3orf52
OASIS PortalC3orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf52
DgiDB (Drug Gene Interaction Database)C3orf52
DoCM (Curated mutations)C3orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf52 (select a term)
intoGenC3orf52
Cancer3DC3orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611956   
Orphanet
MedgenC3orf52
Genetic Testing Registry C3orf52
NextProtQ5BVD1 [Medical]
TSGene79669
GENETestsC3orf52
Target ValidationC3orf52
Huge Navigator C3orf52 [HugePedia]
snp3D : Map Gene to Disease79669
BioCentury BCIQC3orf52
ClinGenC3orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79669
Chemical/Pharm GKB GenePA143485328
Clinical trialC3orf52
Miscellaneous
canSAR (ICR)C3orf52 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf52
EVEXC3orf52
GoPubMedC3orf52
iHOPC3orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:14 CEST 2017

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