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C3orf56 (chromosome 3 open reading frame 56)

Identity

Alias_symbol (synonym)FLJ40141
Other alias-
HGNC (Hugo) C3orf56
LocusID (NCBI) 285311
Atlas_Id 61185
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 127193131 and ends at 127198184 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf56   32481
Cards
Entrez_Gene (NCBI)C3orf56  285311  chromosome 3 open reading frame 56
Aliases
GeneCards (Weizmann)C3orf56
Ensembl hg19 (Hinxton)ENSG00000214324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214324 [Gene_View]  chr3:127193131-127198184 [Contig_View]  C3orf56 [Vega]
ICGC DataPortalENSG00000214324
TCGA cBioPortalC3orf56
AceView (NCBI)C3orf56
Genatlas (Paris)C3orf56
WikiGenes285311
SOURCE (Princeton)C3orf56
Genetics Home Reference (NIH)C3orf56
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf56  -     chr3:127193131-127198184 +  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf56  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblC3orf56 - 3q21.3 [CytoView hg19]  C3orf56 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIC3orf56 [Mapview hg19]  C3orf56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097460 BC137154 BC137155
RefSeq transcript (Entrez)NM_001007534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf56
Cluster EST : UnigeneHs.591284 [ NCBI ]
CGAP (NCI)Hs.591284
Alternative Splicing GalleryENSG00000214324
Gene ExpressionC3orf56 [ NCBI-GEO ]   C3orf56 [ EBI - ARRAY_EXPRESS ]   C3orf56 [ SEEK ]   C3orf56 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285311
GTEX Portal (Tissue expression)C3orf56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N813   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N813  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N813
Splice isoforms : SwissVarQ8N813
PhosPhoSitePlusQ8N813
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf56
DMDM Disease mutations285311
Blocks (Seattle)C3orf56
SuperfamilyQ8N813
Human Protein AtlasENSG00000214324
Peptide AtlasQ8N813
HPRD16949
IPIIPI00167281   
Protein Interaction databases
DIP (DOE-UCLA)Q8N813
IntAct (EBI)Q8N813
FunCoupENSG00000214324
BioGRIDC3orf56
STRING (EMBL)C3orf56
ZODIACC3orf56
Ontologies - Pathways
QuickGOQ8N813
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf56
Atlas of Cancer Signalling NetworkC3orf56
Wikipedia pathwaysC3orf56
Orthology - Evolution
OrthoDB285311
GeneTree (enSembl)ENSG00000214324
Phylogenetic Trees/Animal Genes : TreeFamC3orf56
HOVERGENQ8N813
HOGENOMQ8N813
Homologs : HomoloGeneC3orf56
Homology/Alignments : Family Browser (UCSC)C3orf56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf56
dbVarC3orf56
ClinVarC3orf56
1000_GenomesC3orf56 
Exome Variant ServerC3orf56
ExAC (Exome Aggregation Consortium)C3orf56 (select the gene name)
Genetic variants : HAPMAP285311
Genomic Variants (DGV)C3orf56 [DGVbeta]
DECIPHERC3orf56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf56 
Mutations
ICGC Data PortalC3orf56 
TCGA Data PortalC3orf56 
Broad Tumor PortalC3orf56
OASIS PortalC3orf56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf56
DgiDB (Drug Gene Interaction Database)C3orf56
DoCM (Curated mutations)C3orf56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf56 (select a term)
intoGenC3orf56
Cancer3DC3orf56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf56
Genetic Testing Registry C3orf56
NextProtQ8N813 [Medical]
TSGene285311
GENETestsC3orf56
Target ValidationC3orf56
Huge Navigator C3orf56 [HugePedia]
snp3D : Map Gene to Disease285311
BioCentury BCIQC3orf56
ClinGenC3orf56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285311
Chemical/Pharm GKB GenePA143485332
Clinical trialC3orf56
Miscellaneous
canSAR (ICR)C3orf56 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf56
EVEXC3orf56
GoPubMedC3orf56
iHOPC3orf56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:20 CEST 2017

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