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C3orf58 (chromosome 3 open reading frame 58)

Identity

Alias_symbol (synonym)MGC33365
DIA1
HASF
Other aliasGoPro49
HGNC (Hugo) C3orf58
LocusID (NCBI) 205428
Atlas_Id 56324
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 143973325 and ends at 143992368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKAP13 (15q25.3) / C3orf58 (3q24)C3orf58 (3q24) / CLVS2 (6q22.31)EIF4B (12q13.13) / C3orf58 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf58   28490
Cards
Entrez_Gene (NCBI)C3orf58  205428  chromosome 3 open reading frame 58
AliasesDIA1; GoPro49; HASF
GeneCards (Weizmann)C3orf58
Ensembl hg19 (Hinxton)ENSG00000181744 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181744 [Gene_View]  chr3:143973325-143992368 [Contig_View]  C3orf58 [Vega]
ICGC DataPortalENSG00000181744
TCGA cBioPortalC3orf58
AceView (NCBI)C3orf58
Genatlas (Paris)C3orf58
WikiGenes205428
SOURCE (Princeton)C3orf58
Genetics Home Reference (NIH)C3orf58
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf58  -     chr3:143973325-143992368 +  3q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf58  -     3q24   [Description]    (hg19-Feb_2009)
EnsemblC3orf58 - 3q24 [CytoView hg19]  C3orf58 - 3q24 [CytoView hg38]
Mapping of homologs : NCBIC3orf58 [Mapview hg19]  C3orf58 [Mapview hg38]
OMIM612200   
Gene and transcription
Genbank (Entrez)AK025119 AK095063 AK095161 AK095400 AK294020
RefSeq transcript (Entrez)NM_001134470 NM_173552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf58
Cluster EST : UnigeneHs.288954 [ NCBI ]
CGAP (NCI)Hs.288954
Alternative Splicing GalleryENSG00000181744
Gene ExpressionC3orf58 [ NCBI-GEO ]   C3orf58 [ EBI - ARRAY_EXPRESS ]   C3orf58 [ SEEK ]   C3orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)205428
GTEX Portal (Tissue expression)C3orf58
Human Protein AtlasENSG00000181744-C3orf58 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDZ4
Splice isoforms : SwissVarQ8NDZ4
PhosPhoSitePlusQ8NDZ4
Domains : Interpro (EBI)FAM69_kinase_dom    UPF0672   
Domain families : Pfam (Sanger)PIP49_C (PF12260)   
Domain families : Pfam (NCBI)pfam12260   
Domain structure : Prodom (Prabi Lyon)UPF0672 (PD307452)   
Conserved Domain (NCBI)C3orf58
DMDM Disease mutations205428
Blocks (Seattle)C3orf58
SuperfamilyQ8NDZ4
Human Protein Atlas [tissue]ENSG00000181744-C3orf58 [tissue]
Peptide AtlasQ8NDZ4
HPRD14559
IPIIPI00168631   IPI00796391   IPI00978769   IPI00946345   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDZ4
IntAct (EBI)Q8NDZ4
FunCoupENSG00000181744
BioGRIDC3orf58
STRING (EMBL)C3orf58
ZODIACC3orf58
Ontologies - Pathways
QuickGOQ8NDZ4
Ontology : AmiGOGolgi membrane  extracellular space  regulation of phosphatidylinositol 3-kinase signaling  COPI vesicle coat  COPI-coated vesicle  cardiac muscle cell proliferation  
Ontology : EGO-EBIGolgi membrane  extracellular space  regulation of phosphatidylinositol 3-kinase signaling  COPI vesicle coat  COPI-coated vesicle  cardiac muscle cell proliferation  
NDEx NetworkC3orf58
Atlas of Cancer Signalling NetworkC3orf58
Wikipedia pathwaysC3orf58
Orthology - Evolution
OrthoDB205428
GeneTree (enSembl)ENSG00000181744
Phylogenetic Trees/Animal Genes : TreeFamC3orf58
HOVERGENQ8NDZ4
HOGENOMQ8NDZ4
Homologs : HomoloGeneC3orf58
Homology/Alignments : Family Browser (UCSC)C3orf58
Gene fusions - Rearrangements
Tumor Fusion PortalC3orf58
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf58
dbVarC3orf58
ClinVarC3orf58
1000_GenomesC3orf58 
Exome Variant ServerC3orf58
ExAC (Exome Aggregation Consortium)ENSG00000181744
GNOMAD BrowserENSG00000181744
Genetic variants : HAPMAP205428
Genomic Variants (DGV)C3orf58 [DGVbeta]
DECIPHERC3orf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf58 
Mutations
ICGC Data PortalC3orf58 
TCGA Data PortalC3orf58 
Broad Tumor PortalC3orf58
OASIS PortalC3orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf58
DgiDB (Drug Gene Interaction Database)C3orf58
DoCM (Curated mutations)C3orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf58 (select a term)
intoGenC3orf58
Cancer3DC3orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612200   
Orphanet
DisGeNETC3orf58
MedgenC3orf58
Genetic Testing Registry C3orf58
NextProtQ8NDZ4 [Medical]
TSGene205428
GENETestsC3orf58
Target ValidationC3orf58
Huge Navigator C3orf58 [HugePedia]
snp3D : Map Gene to Disease205428
BioCentury BCIQC3orf58
ClinGenC3orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD205428
Chemical/Pharm GKB GenePA143485334
Clinical trialC3orf58
Miscellaneous
canSAR (ICR)C3orf58 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf58
EVEXC3orf58
GoPubMedC3orf58
iHOPC3orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:05:31 CET 2017

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