Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C3orf62 (chromosome 3 open reading frame 62)

Identity

Alias_symbol (synonym)FLJ43654
Other alias-
HGNC (Hugo) C3orf62
LocusID (NCBI) 375341
Atlas_Id 61187
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49306030 and ends at 49314508 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIF20A (5q31.2) / C3orf62 (3p21.31)USP4 (3p21.31) / C3orf62 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf62   24771
Cards
Entrez_Gene (NCBI)C3orf62  375341  chromosome 3 open reading frame 62
Aliases
GeneCards (Weizmann)C3orf62
Ensembl hg19 (Hinxton) [Gene_View]  chr3:49306030-49314508 [Contig_View]  C3orf62 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:49306030-49314508 [Contig_View]  C3orf62 [Vega]
TCGA cBioPortalC3orf62
AceView (NCBI)C3orf62
Genatlas (Paris)C3orf62
WikiGenes375341
SOURCE (Princeton)C3orf62
Genetics Home Reference (NIH)C3orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C3orf62  -     chr3:49306030-49314508 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C3orf62  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblC3orf62 - 3p21.31 [CytoView hg19]  C3orf62 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIC3orf62 [Mapview hg19]  C3orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056215 AK096799 AK125642 BC023586 BC032616
RefSeq transcript (Entrez)NM_198562
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)C3orf62
Cluster EST : UnigeneHs.403828 [ NCBI ]
CGAP (NCI)Hs.403828
Gene ExpressionC3orf62 [ NCBI-GEO ]   C3orf62 [ EBI - ARRAY_EXPRESS ]   C3orf62 [ SEEK ]   C3orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375341
GTEX Portal (Tissue expression)C3orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUJ4
Splice isoforms : SwissVarQ6ZUJ4
PhosPhoSitePlusQ6ZUJ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf62
DMDM Disease mutations375341
Blocks (Seattle)C3orf62
SuperfamilyQ6ZUJ4
Peptide AtlasQ6ZUJ4
HPRD13475
IPIIPI00374221   IPI00927904   IPI00927289   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUJ4
IntAct (EBI)Q6ZUJ4
BioGRIDC3orf62
STRING (EMBL)C3orf62
ZODIACC3orf62
Ontologies - Pathways
QuickGOQ6ZUJ4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC3orf62
Atlas of Cancer Signalling NetworkC3orf62
Wikipedia pathwaysC3orf62
Orthology - Evolution
OrthoDB375341
Phylogenetic Trees/Animal Genes : TreeFamC3orf62
HOVERGENQ6ZUJ4
HOGENOMQ6ZUJ4
Homologs : HomoloGeneC3orf62
Homology/Alignments : Family Browser (UCSC)C3orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf62
dbVarC3orf62
ClinVarC3orf62
1000_GenomesC3orf62 
Exome Variant ServerC3orf62
ExAC (Exome Aggregation Consortium)C3orf62 (select the gene name)
Genetic variants : HAPMAP375341
Genomic Variants (DGV)C3orf62 [DGVbeta]
DECIPHER (Syndromes)3:49306030-49314508  
CONAN: Copy Number AnalysisC3orf62 
Mutations
ICGC Data PortalC3orf62 
TCGA Data PortalC3orf62 
Broad Tumor PortalC3orf62
OASIS PortalC3orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf62
DgiDB (Drug Gene Interaction Database)C3orf62
DoCM (Curated mutations)C3orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf62 (select a term)
intoGenC3orf62
Cancer3DC3orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf62
Genetic Testing Registry C3orf62
NextProtQ6ZUJ4 [Medical]
TSGene375341
GENETestsC3orf62
Huge Navigator C3orf62 [HugePedia]
snp3D : Map Gene to Disease375341
BioCentury BCIQC3orf62
ClinGenC3orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375341
Chemical/Pharm GKB GenePA143485337
Clinical trialC3orf62
Miscellaneous
canSAR (ICR)C3orf62 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf62
EVEXC3orf62
GoPubMedC3orf62
iHOPC3orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:21 CET 2017

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