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C3orf67 (chromosome 3 open reading frame 67)

Identity

Alias_symbol (synonym)FLJ42117
FLJ42930
Other alias-
HGNC (Hugo) C3orf67
LocusID (NCBI) 200844
Atlas_Id 54174
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 58727737 and ends at 59035715 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LPIN1 (2p25.1) / C3orf67 (3p14.2)MAP1B (5q13.2) / C3orf67 (3p14.2)NUP153 (6p22.3) / C3orf67 (3p14.2)
TKT (3p21.1) / C3orf67 (3p14.2)MAP1B 5q13.2 / C3orf67 3p14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf67   24763
Cards
Entrez_Gene (NCBI)C3orf67  200844  chromosome 3 open reading frame 67
Aliases
GeneCards (Weizmann)C3orf67
Ensembl hg19 (Hinxton)ENSG00000163689 [Gene_View]  chr3:58727737-59035715 [Contig_View]  C3orf67 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163689 [Gene_View]  chr3:58727737-59035715 [Contig_View]  C3orf67 [Vega]
ICGC DataPortalENSG00000163689
TCGA cBioPortalC3orf67
AceView (NCBI)C3orf67
Genatlas (Paris)C3orf67
WikiGenes200844
SOURCE (Princeton)C3orf67
Genetics Home Reference (NIH)C3orf67
Genomic and cartography
GoldenPath hg19 (UCSC)C3orf67  -     chr3:58727737-59035715 -  3p14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C3orf67  -     3p14.2   [Description]    (hg38-Dec_2013)
EnsemblC3orf67 - 3p14.2 [CytoView hg19]  C3orf67 - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf67 [Mapview hg19]  C3orf67 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124111 AK124920 AK128200 AK296111 BC050317
RefSeq transcript (Entrez)NM_198463
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)C3orf67
Cluster EST : UnigeneHs.368434 [ NCBI ]
CGAP (NCI)Hs.368434
Alternative Splicing GalleryENSG00000163689
Gene ExpressionC3orf67 [ NCBI-GEO ]   C3orf67 [ EBI - ARRAY_EXPRESS ]   C3orf67 [ SEEK ]   C3orf67 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf67 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200844
GTEX Portal (Tissue expression)C3orf67
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVT6
Splice isoforms : SwissVarQ6ZVT6
PhosPhoSitePlusQ6ZVT6
Domains : Interpro (EBI)C3orf67    CFA20/WDR90/C3orf67   
Domain families : Pfam (Sanger)DUF667 (PF05018)   
Domain families : Pfam (NCBI)pfam05018   
Conserved Domain (NCBI)C3orf67
DMDM Disease mutations200844
Blocks (Seattle)C3orf67
SuperfamilyQ6ZVT6
Human Protein AtlasENSG00000163689
Peptide AtlasQ6ZVT6
HPRD13458
IPIIPI00445943   IPI00394813   IPI00947424   IPI00945028   IPI00909314   IPI00946146   IPI00945811   IPI00946803   IPI00946436   IPI00947230   IPI00946586   IPI00967025   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVT6
IntAct (EBI)Q6ZVT6
FunCoupENSG00000163689
BioGRIDC3orf67
STRING (EMBL)C3orf67
ZODIACC3orf67
Ontologies - Pathways
QuickGOQ6ZVT6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf67
Atlas of Cancer Signalling NetworkC3orf67
Wikipedia pathwaysC3orf67
Orthology - Evolution
OrthoDB200844
GeneTree (enSembl)ENSG00000163689
Phylogenetic Trees/Animal Genes : TreeFamC3orf67
HOVERGENQ6ZVT6
HOGENOMQ6ZVT6
Homologs : HomoloGeneC3orf67
Homology/Alignments : Family Browser (UCSC)C3orf67
Gene fusions - Rearrangements
Fusion : MitelmanLPIN1/C3orf67 [2p25.1/3p14.2]  [t(2;3)(p25;p14)]  
Fusion : MitelmanMAP1B/C3orf67 [5q13.2/3p14.2]  [t(3;5)(p14;q13)]  
Fusion : MitelmanNUP153/C3orf67 [6p22.3/3p14.2]  [t(3;6)(p14;p22)]  
Fusion: TCGAMAP1B 5q13.2 C3orf67 3p14.2 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf67
dbVarC3orf67
ClinVarC3orf67
1000_GenomesC3orf67 
Exome Variant ServerC3orf67
ExAC (Exome Aggregation Consortium)C3orf67 (select the gene name)
Genetic variants : HAPMAP200844
Genomic Variants (DGV)C3orf67 [DGVbeta]
DECIPHER (Syndromes)3:58727737-59035715  ENSG00000163689
CONAN: Copy Number AnalysisC3orf67 
Mutations
ICGC Data PortalC3orf67 
TCGA Data PortalC3orf67 
Broad Tumor PortalC3orf67
OASIS PortalC3orf67 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf67  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf67
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf67
DgiDB (Drug Gene Interaction Database)C3orf67
DoCM (Curated mutations)C3orf67 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf67 (select a term)
intoGenC3orf67
Cancer3DC3orf67(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf67
Genetic Testing Registry C3orf67
NextProtQ6ZVT6 [Medical]
TSGene200844
GENETestsC3orf67
Huge Navigator C3orf67 [HugePedia]
snp3D : Map Gene to Disease200844
BioCentury BCIQC3orf67
ClinGenC3orf67
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200844
Chemical/Pharm GKB GenePA162379670
Clinical trialC3orf67
Miscellaneous
canSAR (ICR)C3orf67 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf67
EVEXC3orf67
GoPubMedC3orf67
iHOPC3orf67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:37 CEST 2017

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