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C3orf70 (chromosome 3 open reading frame 70)

Identity

Other alias-
HGNC (Hugo) C3orf70
LocusID (NCBI) 285382
Atlas_Id 53921
Location 3q27.2  [Link to chromosome band 3q27]
Location_base_pair Starts at 184795838 and ends at 184870802 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C3orf70 (3q27.2) / PHF20 (20q11.22)C3orf70 (3q27.2) / TPRG1 (3q28)LSAMP (3q13.31) / C3orf70 (3q27.2)
TNKS2 (10q23.32) / C3orf70 (3q27.2)C3orf70 3q27.2 / TPRG1 3q28LSAMP 3q13.31 / C3orf70 3q27.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf70   33731
Cards
Entrez_Gene (NCBI)C3orf70  285382  chromosome 3 open reading frame 70
Aliases
GeneCards (Weizmann)C3orf70
Ensembl hg19 (Hinxton)ENSG00000187068 [Gene_View]  chr3:184795838-184870802 [Contig_View]  C3orf70 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187068 [Gene_View]  chr3:184795838-184870802 [Contig_View]  C3orf70 [Vega]
ICGC DataPortalENSG00000187068
TCGA cBioPortalC3orf70
AceView (NCBI)C3orf70
Genatlas (Paris)C3orf70
WikiGenes285382
SOURCE (Princeton)C3orf70
Genetics Home Reference (NIH)C3orf70
Genomic and cartography
GoldenPath hg19 (UCSC)C3orf70  -     chr3:184795838-184870802 -  3q27.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C3orf70  -     3q27.2   [Description]    (hg38-Dec_2013)
EnsemblC3orf70 - 3q27.2 [CytoView hg19]  C3orf70 - 3q27.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf70 [Mapview hg19]  C3orf70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137178 BC137179 BC150565
RefSeq transcript (Entrez)NM_001025266
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)C3orf70
Cluster EST : UnigeneHs.380048 [ NCBI ]
CGAP (NCI)Hs.380048
Alternative Splicing GalleryENSG00000187068
Gene ExpressionC3orf70 [ NCBI-GEO ]   C3orf70 [ EBI - ARRAY_EXPRESS ]   C3orf70 [ SEEK ]   C3orf70 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285382
GTEX Portal (Tissue expression)C3orf70
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLC5
Splice isoforms : SwissVarA6NLC5
PhosPhoSitePlusA6NLC5
Domains : Interpro (EBI)UPF0524_fam   
Domain families : Pfam (Sanger)UPF0524 (PF15823)   
Domain families : Pfam (NCBI)pfam15823   
Conserved Domain (NCBI)C3orf70
DMDM Disease mutations285382
Blocks (Seattle)C3orf70
SuperfamilyA6NLC5
Human Protein AtlasENSG00000187068
Peptide AtlasA6NLC5
HPRD18774
IPIIPI00176169   
Protein Interaction databases
DIP (DOE-UCLA)A6NLC5
IntAct (EBI)A6NLC5
FunCoupENSG00000187068
BioGRIDC3orf70
STRING (EMBL)C3orf70
ZODIACC3orf70
Ontologies - Pathways
QuickGOA6NLC5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf70
Atlas of Cancer Signalling NetworkC3orf70
Wikipedia pathwaysC3orf70
Orthology - Evolution
OrthoDB285382
GeneTree (enSembl)ENSG00000187068
Phylogenetic Trees/Animal Genes : TreeFamC3orf70
HOVERGENA6NLC5
HOGENOMA6NLC5
Homologs : HomoloGeneC3orf70
Homology/Alignments : Family Browser (UCSC)C3orf70
Gene fusions - Rearrangements
Fusion : MitelmanC3orf70/TPRG1 [3q27.2/3q28]  
Fusion : MitelmanLSAMP/C3orf70 [3q13.31/3q27.2]  [t(3;3)(q13;q27)]  
Fusion: TCGAC3orf70 3q27.2 TPRG1 3q28 BRCA
Fusion: TCGALSAMP 3q13.31 C3orf70 3q27.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf70
dbVarC3orf70
ClinVarC3orf70
1000_GenomesC3orf70 
Exome Variant ServerC3orf70
ExAC (Exome Aggregation Consortium)C3orf70 (select the gene name)
Genetic variants : HAPMAP285382
Genomic Variants (DGV)C3orf70 [DGVbeta]
DECIPHER (Syndromes)3:184795838-184870802  ENSG00000187068
CONAN: Copy Number AnalysisC3orf70 
Mutations
ICGC Data PortalC3orf70 
TCGA Data PortalC3orf70 
Broad Tumor PortalC3orf70
OASIS PortalC3orf70 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf70  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf70
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf70
DgiDB (Drug Gene Interaction Database)C3orf70
DoCM (Curated mutations)C3orf70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf70 (select a term)
intoGenC3orf70
Cancer3DC3orf70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf70
Genetic Testing Registry C3orf70
NextProtA6NLC5 [Medical]
TSGene285382
GENETestsC3orf70
Huge Navigator C3orf70 [HugePedia]
snp3D : Map Gene to Disease285382
BioCentury BCIQC3orf70
ClinGenC3orf70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285382
Chemical/Pharm GKB GenePA162379707
Clinical trialC3orf70
Miscellaneous
canSAR (ICR)C3orf70 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf70
EVEXC3orf70
GoPubMedC3orf70
iHOPC3orf70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:15 CET 2017

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