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C3orf79 (chromosome 3 open reading frame 79)

Identity

Other alias-
HGNC (Hugo) C3orf79
LocusID (NCBI) 152118
Atlas_Id 54175
Location 3q25.2  [Link to chromosome band 3q25]
Location_base_pair Starts at 153484495 and ends at 153502697 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PYDC2 (3q28) / C3orf79 (3q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

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Nomenclature
HGNC (Hugo)C3orf79   37259
Cards
Entrez_Gene (NCBI)C3orf79  152118  chromosome 3 open reading frame 79
Aliases
GeneCards (Weizmann)C3orf79
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:153484495-153502697 [Contig_View]  C3orf79 [Vega]
TCGA cBioPortalC3orf79
AceView (NCBI)C3orf79
Genatlas (Paris)C3orf79
WikiGenes152118
SOURCE (Princeton)C3orf79
Genetics Home Reference (NIH)C3orf79
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf79  -     chr3:153484495-153502697 +  3q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf79  -     3q25.2   [Description]    (hg19-Feb_2009)
EnsemblC3orf79 - 3q25.2 [CytoView hg19]  C3orf79 - 3q25.2 [CytoView hg38]
Mapping of homologs : NCBIC3orf79 [Mapview hg19]  C3orf79 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086445
RefSeq transcript (Entrez)NM_001101337
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf79
Cluster EST : UnigeneHs.58586 [ NCBI ]
CGAP (NCI)Hs.58586
Gene ExpressionC3orf79 [ NCBI-GEO ]   C3orf79 [ EBI - ARRAY_EXPRESS ]   C3orf79 [ SEEK ]   C3orf79 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152118
GTEX Portal (Tissue expression)C3orf79
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CE67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CE67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CE67
Splice isoforms : SwissVarP0CE67
PhosPhoSitePlusP0CE67
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf79
DMDM Disease mutations152118
Blocks (Seattėe)<-TD>C3orf79
SuperfamilyP0CE67
Peptide AtlasP0CE67
IPIIPI00079615   
Protein Interaction databases
DIP (DOE-UCLA)P0CE67
IntAct (EBI)P0CE67
BioGRIDC3orf79
STRING (EMBL)C3orf79
ZODIACC3orf79
Ontologies - Pathways
QuickGOP0CE67
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf79
Atlas of Cancer Signalling NetworkC3orf79
Wikipedia pathwaysC3orf79
Orthology - Evolution
OrthoDB152118
Phylogenetic Trees/Animal Genes : TreeFamC3orf79
HOVERGENP0CE67
HOGENOMP0CE67
Homologs : HomoloGeneC3orf79
Homology/Alignments : Family Browser (UCSC)C3orf79
Gene fusions - Rearrangements
Fusion : MitelmanPYDC2/C3orf79 [3q28/3q25.2]  [t(3;3)(q25;q28)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf79
dbVarC3orf79
ClinVarC3orf79
1000_GenomesC3orf79 
Exome Variant ServerC3orf79
ExAC (Exome Aggregation Consortium)C3orf79 (select the gene name)
Genetic variants : HAPMAP152118
Genomic Variants (DGV)C3orf79 [DGVbeta]
DECIPHERC3orf79 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf79 
Mutations
ICGC Data PortalC3orf79 
TCGA Data PortalC3orf79 
Broad Tumor PortalC3orf79
OASIS PortalC3orf79 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf79  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf79
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf79
DgiDB (Drug Gene Interaction Database)C3orf79
DoCM (Curated mutations)C3orf79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf79 (select a term)
intoGenC3orf79
Cancer3DC3orf79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf79
Genetic Testing Registry C3orf79
NextProtP0CE67 [Medical]
TSGene152118
GENETestsC3orf79
Target ValidationC3orf79
Huge Navigator C3orf79 [HugePedia]
snp3D : Map Gene to Disease152118
BioCentury BCIQC3orf79
ClinGenC3orf79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152118
Chemical/Pharm GKB GenePA165696932
Clinical trialC3orf79
Miscellaneous
canSAR (ICR)C3orf79 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf79
EVEXC3orf79
GoPubMedC3orf79
iHOPC3orf79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:00:00 CEST 2017

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