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C3orf80 (chromosome 3 open reading frame 80)

Identity

Other alias-
HGNC (Hugo) C3orf80
LocusID (NCBI) 401097
Atlas_Id 61189
Location 3q25.33  [Link to chromosome band 3q25]
Location_base_pair Starts at 159943423 and ends at 159946000 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf80   40048
Cards
Entrez_Gene (NCBI)C3orf80  401097  chromosome 3 open reading frame 80
Aliases
GeneCards (Weizmann)C3orf80
Ensembl hg19 (Hinxton)ENSG00000180044 [Gene_View]  chr3:159943423-159946000 [Contig_View]  C3orf80 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180044 [Gene_View]  chr3:159943423-159946000 [Contig_View]  C3orf80 [Vega]
ICGC DataPortalENSG00000180044
TCGA cBioPortalC3orf80
AceView (NCBI)C3orf80
Genatlas (Paris)C3orf80
WikiGenes401097
SOURCE (Princeton)C3orf80
Genetics Home Reference (NIH)C3orf80
Genomic and cartography
GoldenPath hg19 (UCSC)C3orf80  -     chr3:159943423-159946000 +  3q25.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C3orf80  -     3q25.33   [Description]    (hg38-Dec_2013)
EnsemblC3orf80 - 3q25.33 [CytoView hg19]  C3orf80 - 3q25.33 [CytoView hg38]
Mapping of homologs : NCBIC3orf80 [Mapview hg19]  C3orf80 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031660 HG496252 LK937727
RefSeq transcript (Entrez)NM_001168214
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)C3orf80
Cluster EST : UnigeneHs.729755 [ NCBI ]
CGAP (NCI)Hs.729755
Alternative Splicing GalleryENSG00000180044
Gene ExpressionC3orf80 [ NCBI-GEO ]   C3orf80 [ EBI - ARRAY_EXPRESS ]   C3orf80 [ SEEK ]   C3orf80 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401097
GTEX Portal (Tissue expression)C3orf80
Protein : pattern, domain, 3D structure
UniProt/SwissProtF5H4A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF5H4A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF5H4A9
Splice isoforms : SwissVarF5H4A9
PhosPhoSitePlusF5H4A9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf80
DMDM Disease mutations401097
Blocks (Seattle)C3orf80
SuperfamilyF5H4A9
Human Protein AtlasENSG00000180044
Peptide AtlasF5H4A9
IPIIPI00888344   
Protein Interaction databases
DIP (DOE-UCLA)F5H4A9
IntAct (EBI)F5H4A9
FunCoupENSG00000180044
BioGRIDC3orf80
STRING (EMBL)C3orf80
ZODIACC3orf80
Ontologies - Pathways
QuickGOF5H4A9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC3orf80
Atlas of Cancer Signalling NetworkC3orf80
Wikipedia pathwaysC3orf80
Orthology - Evolution
OrthoDB401097
GeneTree (enSembl)ENSG00000180044
Phylogenetic Trees/Animal Genes : TreeFamC3orf80
HOVERGENF5H4A9
HOGENOMF5H4A9
Homologs : HomoloGeneC3orf80
Homology/Alignments : Family Browser (UCSC)C3orf80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf80
dbVarC3orf80
ClinVarC3orf80
1000_GenomesC3orf80 
Exome Variant ServerC3orf80
ExAC (Exome Aggregation Consortium)C3orf80 (select the gene name)
Genetic variants : HAPMAP401097
Genomic Variants (DGV)C3orf80 [DGVbeta]
DECIPHER (Syndromes)3:159943423-159946000  ENSG00000180044
CONAN: Copy Number AnalysisC3orf80 
Mutations
ICGC Data PortalC3orf80 
TCGA Data PortalC3orf80 
Broad Tumor PortalC3orf80
OASIS PortalC3orf80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC3orf80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC3orf80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C3orf80
DgiDB (Drug Gene Interaction Database)C3orf80
DoCM (Curated mutations)C3orf80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf80 (select a term)
intoGenC3orf80
Cancer3DC3orf80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf80
Genetic Testing Registry C3orf80
NextProtF5H4A9 [Medical]
TSGene401097
GENETestsC3orf80
Huge Navigator C3orf80 [HugePedia]
snp3D : Map Gene to Disease401097
BioCentury BCIQC3orf80
ClinGenC3orf80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401097
Clinical trialC3orf80
Miscellaneous
canSAR (ICR)C3orf80 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf80
EVEXC3orf80
GoPubMedC3orf80
iHOPC3orf80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:21 CET 2017

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