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C3orf84 (chromosome 3 open reading frame 84)

Identity

Other alias-
HGNC (Hugo) C3orf84
LocusID (NCBI) 646498
Atlas_Id 61190
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49177636 and ends at 49191858 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C3orf84   44666
Cards
Entrez_Gene (NCBI)C3orf84  646498  chromosome 3 open reading frame 84
Aliases
GeneCards (Weizmann)C3orf84
Ensembl hg19 (Hinxton)ENSG00000236980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236980 [Gene_View]  chr3:49177636-49191858 [Contig_View]  C3orf84 [Vega]
ICGC DataPortalENSG00000236980
TCGA cBioPortalC3orf84
AceView (NCBI)C3orf84
Genatlas (Paris)C3orf84
WikiGenes646498
SOURCE (Princeton)C3orf84
Genetics Home Reference (NIH)C3orf84
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf84  -     chr3:49177636-49191858 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf84  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblC3orf84 - 3p21.31 [CytoView hg19]  C3orf84 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIC3orf84 [Mapview hg19]  C3orf84 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf84
Cluster EST : UnigeneHs.143880 [ NCBI ]
CGAP (NCI)Hs.143880
Alternative Splicing GalleryENSG00000236980
Gene ExpressionC3orf84 [ NCBI-GEO ]   C3orf84 [ EBI - ARRAY_EXPRESS ]   C3orf84 [ SEEK ]   C3orf84 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646498
GTEX Portal (Tissue expression)C3orf84
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BNL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BNL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BNL1
Splice isoforms : SwissVarH3BNL1
PhosPhoSitePlusH3BNL1
Domains : Interpro (EBI)HDNR   
Domain families : Pfam (Sanger)HDNR (PF15115)   
Domain families : Pfam (NCBI)pfam15115   
Conserved Domain (NCBI)C3orf84
DMDM Disease mutations646498
Blocks (Seattle)C3orf84
SuperfamilyH3BNL1
Human Protein AtlasENSG00000236980
Peptide AtlasH3BNL1
IPIIPI00827495   
Protein Interaction databases
DIP (DOE-UCLA)H3BNL1
IntAct (EBI)H3BNL1
FunCoupENSG00000236980
BioGRIDC3orf84
STRING (EMBL)C3orf84
ZODIACC3orf84
Ontologies - Pathways
QuickGOH3BNL1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf84
Atlas of Cancer Signalling NetworkC3orf84
Wikipedia pathwaysC3orf84
Orthology - Evolution
OrthoDB646498
GeneTree (enSembl)ENSG00000236980
Phylogenetic Trees/Animal Genes : TreeFamC3orf84
HOVERGENH3BNL1
HOGENOMH3BNL1
Homologs : HomoloGeneC3orf84
Homology/Alignments : Family Browser (UCSC)C3orf84
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf84
dbVarC3orf84
ClinVarC3orf84
1000_GenomesC3orf84 
Exome Variant ServerC3orf84
ExAC (Exome Aggregation Consortium)C3orf84 (select the gene name)
Genetic variants : HAPMAP646498
Genomic Variants (DGV)C3orf84 [DGVbeta]
DECIPHERC3orf84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf84 
Mutations
ICGC Data PortalC3orf84 
TCGA Data PortalC3orf84 
Broad Tumor PortalC3orf84
OASIS PortalC3orf84 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC3orf84
BioMutasearch C3orf84
DgiDB (Drug Gene Interaction Database)C3orf84
DoCM (Curated mutations)C3orf84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf84 (select a term)
intoGenC3orf84
Cancer3DC3orf84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC3orf84
Genetic Testing Registry C3orf84
NextProtH3BNL1 [Medical]
TSGene646498
GENETestsC3orf84
Target ValidationC3orf84
Huge Navigator C3orf84 [HugePedia]
snp3D : Map Gene to Disease646498
BioCentury BCIQC3orf84
ClinGenC3orf84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646498
Chemical/Pharm GKB GenePA166123667
Clinical trialC3orf84
Miscellaneous
canSAR (ICR)C3orf84 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf84
EVEXC3orf84
GoPubMedC3orf84
iHOPC3orf84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:16 CEST 2017

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