Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C4B_2 (complement component 4B (Chido blood group), copy 2)

Identity

Other alias-
HGNC (Hugo) C4B_2
LocusID (NCBI) 100293534
Atlas_Id 61192
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31982057 and ends at 32002681 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4B_2   42398
Cards
Entrez_Gene (NCBI)C4B_2  100293534  complement component 4B (Chido blood group), copy 2
Aliases
GeneCards (Weizmann)C4B_2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:31982057-32002681 [Contig_View]  C4B_2 [Vega]
TCGA cBioPortalC4B_2
AceView (NCBI)C4B_2
Genatlas (Paris)C4B_2
WikiGenes100293534
SOURCE (Princeton)C4B_2
Genetics Home Reference (NIH)C4B_2
Genomic and cartography
GoldenPath hg38 (UCSC)C4B_2  -     chr6:31982057-32002681 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4B_2  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblC4B_2 - 6p21.33 [CytoView hg19]  C4B_2 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIC4B_2 [Mapview hg19]  C4B_2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242823
RefSeq genomic (Entrez)NG_011638 NT_167249
Consensus coding sequences : CCDS (NCBI)C4B_2
Cluster EST : UnigeneHs.720022 [ NCBI ]
CGAP (NCI)Hs.720022
Gene ExpressionC4B_2 [ NCBI-GEO ]   C4B_2 [ EBI - ARRAY_EXPRESS ]   C4B_2 [ SEEK ]   C4B_2 [ MEM ]
Gene Expression Viewer (FireBrowse)C4B_2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100293534
GTEX Portal (Tissue expression)C4B_2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C0L5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C0L5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C0L5
Splice isoforms : SwissVarP0C0L5
PhosPhoSitePlusP0C0L5
Domaine pattern : Prosite (Expaxy)ALPHA_2_MACROGLOBULIN (PS00477)    ANAPHYLATOXIN_1 (PS01177)    ANAPHYLATOXIN_2 (PS01178)    NTR (PS50189)   
Domains : Interpro (EBI)###############################################################################################################################################################################################################################################################                                                       
Domain families : Pfam (Sanger)A2M (PF00207)    A2M_comp (PF07678)    A2M_N (PF01835)    A2M_N_2 (PF07703)    A2M_recep (PF07677)    ANATO (PF01821)    NTR (PF01759)    Thiol-ester_cl (PF10569)   
Domain families : Pfam (NCBI)pfam00207    pfam07678    pfam01835    pfam07703    pfam07677    pfam01821    pfam01759    pfam10569   
Domain families : Smart (EMBL)A2M (SM01360)  A2M_N_2 (SM01359)  A2M_recep (SM01361)  ANATO (SM00104)  C345C (SM00643)  
Conserved Domain (NCBI)C4B_2
DMDM Disease mutations100293534
Blocks (Seattle)C4B_2
PDB (SRS)4XAM   
PDB (PDBSum)4XAM   
PDB (IMB)4XAM   
PDB (RSDB)4XAM   
Structural Biology KnowledgeBase4XAM   
SCOP (Structural Classification of Proteins)4XAM   
CATH (Classification of proteins structures)4XAM   
SuperfamilyP0C0L5
Peptide AtlasP0C0L5
Protein Interaction databases
DIP (DOE-UCLA)P0C0L5
IntAct (EBI)P0C0L5
BioGRIDC4B_2
STRING (EMBL)C4B_2
ZODIACC4B_2
Ontologies - Pathways
QuickGOP0C0L5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4B_2
Atlas of Cancer Signalling NetworkC4B_2
Wikipedia pathwaysC4B_2
Orthology - Evolution
OrthoDB100293534
Phylogenetic Trees/Animal Genes : TreeFamC4B_2
HOVERGENP0C0L5
HOGENOMP0C0L5
Homologs : HomoloGeneC4B_2
Homology/Alignments : Family Browser (UCSC)C4B_2
Gene fusions - Rearrangements
Fusion : QuiverC4B_2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4B_2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4B_2
dbVarC4B_2
ClinVarC4B_2
1000_GenomesC4B_2 
Exome Variant ServerC4B_2
Varsome BrowserC4B_2
Genetic variants : HAPMAP100293534
Genomic Variants (DGV)C4B_2 [DGVbeta]
DECIPHERC4B_2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4B_2 
Mutations
ICGC Data PortalC4B_2 
TCGA Data PortalC4B_2 
Broad Tumor PortalC4B_2
OASIS PortalC4B_2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC4B_2
BioMutasearch C4B_2
DgiDB (Drug Gene Interaction Database)C4B_2
DoCM (Curated mutations)C4B_2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4B_2 (select a term)
intoGenC4B_2
Cancer3DC4B_2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC4B_2
MedgenC4B_2
Genetic Testing Registry C4B_2
NextProtP0C0L5 [Medical]
TSGene100293534
GENETestsC4B_2
Target ValidationC4B_2
Huge Navigator C4B_2 [HugePedia]
snp3D : Map Gene to Disease100293534
BioCentury BCIQC4B_2
ClinGenC4B_2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100293534
Chemical/Pharm GKB GenePA166049083
Clinical trialC4B_2
Miscellaneous
canSAR (ICR)C4B_2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4B_2
EVEXC4B_2
GoPubMedC4B_2
iHOPC4B_2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:38:27 CEST 2018

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