Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C4orf17 (chromosome 4 open reading frame 17)

Identity

Alias_symbol (synonym)DKFZP434G072
Other alias-
HGNC (Hugo) C4orf17
LocusID (NCBI) 84103
Atlas_Id 40314
Location 4q23  [Link to chromosome band 4q23]
Location_base_pair Starts at 100432161 and ends at 100463460 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf17   25274
Cards
Entrez_Gene (NCBI)C4orf17  84103  chromosome 4 open reading frame 17
Aliases
GeneCards (Weizmann)C4orf17
Ensembl hg19 (Hinxton)ENSG00000138813 [Gene_View]  chr4:100432161-100463460 [Contig_View]  C4orf17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138813 [Gene_View]  chr4:100432161-100463460 [Contig_View]  C4orf17 [Vega]
ICGC DataPortalENSG00000138813
TCGA cBioPortalC4orf17
AceView (NCBI)C4orf17
Genatlas (Paris)C4orf17
WikiGenes84103
SOURCE (Princeton)C4orf17
Genetics Home Reference (NIH)C4orf17
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf17  -     chr4:100432161-100463460 +  4q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf17  -     4q23   [Description]    (hg38-Dec_2013)
EnsemblC4orf17 - 4q23 [CytoView hg19]  C4orf17 - 4q23 [CytoView hg38]
Mapping of homologs : NCBIC4orf17 [Mapview hg19]  C4orf17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093085 AK223345 AK314711 AL136838 BC069805
RefSeq transcript (Entrez)NM_032149
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)C4orf17
Cluster EST : UnigeneHs.97501 [ NCBI ]
CGAP (NCI)Hs.97501
Alternative Splicing GalleryENSG00000138813
Gene ExpressionC4orf17 [ NCBI-GEO ]   C4orf17 [ EBI - ARRAY_EXPRESS ]   C4orf17 [ SEEK ]   C4orf17 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84103
GTEX Portal (Tissue expression)C4orf17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53FE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53FE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53FE4
Splice isoforms : SwissVarQ53FE4
PhosPhoSitePlusQ53FE4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C4orf17
DMDM Disease mutations84103
Blocks (Seattle)C4orf17
SuperfamilyQ53FE4
Human Protein AtlasENSG00000138813
Peptide AtlasQ53FE4
HPRD12825
IPIIPI00030308   IPI00967328   IPI00967595   
Protein Interaction databases
DIP (DOE-UCLA)Q53FE4
IntAct (EBI)Q53FE4
FunCoupENSG00000138813
BioGRIDC4orf17
STRING (EMBL)C4orf17
ZODIACC4orf17
Ontologies - Pathways
QuickGOQ53FE4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4orf17
Atlas of Cancer Signalling NetworkC4orf17
Wikipedia pathwaysC4orf17
Orthology - Evolution
OrthoDB84103
GeneTree (enSembl)ENSG00000138813
Phylogenetic Trees/Animal Genes : TreeFamC4orf17
HOVERGENQ53FE4
HOGENOMQ53FE4
Homologs : HomoloGeneC4orf17
Homology/Alignments : Family Browser (UCSC)C4orf17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf17
dbVarC4orf17
ClinVarC4orf17
1000_GenomesC4orf17 
Exome Variant ServerC4orf17
ExAC (Exome Aggregation Consortium)C4orf17 (select the gene name)
Genetic variants : HAPMAP84103
Genomic Variants (DGV)C4orf17 [DGVbeta]
DECIPHER (Syndromes)4:100432161-100463460  ENSG00000138813
CONAN: Copy Number AnalysisC4orf17 
Mutations
ICGC Data PortalC4orf17 
TCGA Data PortalC4orf17 
Broad Tumor PortalC4orf17
OASIS PortalC4orf17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf17
DgiDB (Drug Gene Interaction Database)C4orf17
DoCM (Curated mutations)C4orf17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf17 (select a term)
intoGenC4orf17
Cancer3DC4orf17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf17
Genetic Testing Registry C4orf17
NextProtQ53FE4 [Medical]
TSGene84103
GENETestsC4orf17
Huge Navigator C4orf17 [HugePedia]
snp3D : Map Gene to Disease84103
BioCentury BCIQC4orf17
ClinGenC4orf17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84103
Chemical/Pharm GKB GenePA134913125
Clinical trialC4orf17
Miscellaneous
canSAR (ICR)C4orf17 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf17
EVEXC4orf17
GoPubMedC4orf17
iHOPC4orf17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:16 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.