Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C4orf19 (chromosome 4 open reading frame 19)

Identity

Alias_symbol (synonym)FLJ11017
Other alias-
HGNC (Hugo) C4orf19
LocusID (NCBI) 55286
Atlas_Id 61194
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 37455552 and ends at 37595132 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C4orf19 (4p14) / C4orf19 (4p14)NEAT1 (11q13.1) / C4orf19 (4p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf19   25618
Cards
Entrez_Gene (NCBI)C4orf19  55286  chromosome 4 open reading frame 19
Aliases
GeneCards (Weizmann)C4orf19
Ensembl hg19 (Hinxton)ENSG00000154274 [Gene_View]  chr4:37455552-37595132 [Contig_View]  C4orf19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154274 [Gene_View]  chr4:37455552-37595132 [Contig_View]  C4orf19 [Vega]
ICGC DataPortalENSG00000154274
TCGA cBioPortalC4orf19
AceView (NCBI)C4orf19
Genatlas (Paris)C4orf19
WikiGenes55286
SOURCE (Princeton)C4orf19
Genetics Home Reference (NIH)C4orf19
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf19  -     chr4:37455552-37595132 +  4p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf19  -     4p14   [Description]    (hg38-Dec_2013)
EnsemblC4orf19 - 4p14 [CytoView hg19]  C4orf19 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIC4orf19 [Mapview hg19]  C4orf19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI050941 AK001879 AK225192 BC037906 BP220791
RefSeq transcript (Entrez)NM_001104629 NM_018302
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)C4orf19
Cluster EST : UnigeneHs.107527 [ NCBI ]
CGAP (NCI)Hs.107527
Alternative Splicing GalleryENSG00000154274
Gene ExpressionC4orf19 [ NCBI-GEO ]   C4orf19 [ EBI - ARRAY_EXPRESS ]   C4orf19 [ SEEK ]   C4orf19 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55286
GTEX Portal (Tissue expression)C4orf19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY42
Splice isoforms : SwissVarQ8IY42
PhosPhoSitePlusQ8IY42
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C4orf19
DMDM Disease mutations55286
Blocks (Seattle)C4orf19
SuperfamilyQ8IY42
Human Protein AtlasENSG00000154274
Peptide AtlasQ8IY42
HPRD07725
IPIIPI00293359   IPI00965565   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY42
IntAct (EBI)Q8IY42
FunCoupENSG00000154274
BioGRIDC4orf19
STRING (EMBL)C4orf19
ZODIACC4orf19
Ontologies - Pathways
QuickGOQ8IY42
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC4orf19
Atlas of Cancer Signalling NetworkC4orf19
Wikipedia pathwaysC4orf19
Orthology - Evolution
OrthoDB55286
GeneTree (enSembl)ENSG00000154274
Phylogenetic Trees/Animal Genes : TreeFamC4orf19
HOVERGENQ8IY42
HOGENOMQ8IY42
Homologs : HomoloGeneC4orf19
Homology/Alignments : Family Browser (UCSC)C4orf19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf19
dbVarC4orf19
ClinVarC4orf19
1000_GenomesC4orf19 
Exome Variant ServerC4orf19
ExAC (Exome Aggregation Consortium)C4orf19 (select the gene name)
Genetic variants : HAPMAP55286
Genomic Variants (DGV)C4orf19 [DGVbeta]
DECIPHER (Syndromes)4:37455552-37595132  ENSG00000154274
CONAN: Copy Number AnalysisC4orf19 
Mutations
ICGC Data PortalC4orf19 
TCGA Data PortalC4orf19 
Broad Tumor PortalC4orf19
OASIS PortalC4orf19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf19
DgiDB (Drug Gene Interaction Database)C4orf19
DoCM (Curated mutations)C4orf19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf19 (select a term)
intoGenC4orf19
Cancer3DC4orf19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf19
Genetic Testing Registry C4orf19
NextProtQ8IY42 [Medical]
TSGene55286
GENETestsC4orf19
Huge Navigator C4orf19 [HugePedia]
snp3D : Map Gene to Disease55286
BioCentury BCIQC4orf19
ClinGenC4orf19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55286
Chemical/Pharm GKB GenePA144596500
Clinical trialC4orf19
Miscellaneous
canSAR (ICR)C4orf19 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf19
EVEXC4orf19
GoPubMedC4orf19
iHOPC4orf19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:22 CET 2017

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