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C4orf22 (chromosome 4 open reading frame 22)

Identity

Other alias-
HGNC (Hugo) C4orf22
LocusID (NCBI) 255119
Atlas_Id 54176
Location 4q21.21  [Link to chromosome band 4q21]
Location_base_pair Starts at 81256874 and ends at 81884910 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATG4D (19p13.2) / C4orf22 (4q21.21)C4orf22 (4q21.21) / MYH13 (17p13.1)C4orf22 (4q21.21) / RERE (1p36.23)
RBFOX3 (17q25.3) / C4orf22 (4q21.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf22   28554
Cards
Entrez_Gene (NCBI)C4orf22  255119  chromosome 4 open reading frame 22
Aliases
GeneCards (Weizmann)C4orf22
Ensembl hg19 (Hinxton)ENSG00000197826 [Gene_View]  chr4:81256874-81884910 [Contig_View]  C4orf22 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197826 [Gene_View]  chr4:81256874-81884910 [Contig_View]  C4orf22 [Vega]
ICGC DataPortalENSG00000197826
TCGA cBioPortalC4orf22
AceView (NCBI)C4orf22
Genatlas (Paris)C4orf22
WikiGenes255119
SOURCE (Princeton)C4orf22
Genetics Home Reference (NIH)C4orf22
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf22  -     chr4:81256874-81884910 +  4q21.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf22  -     4q21.21   [Description]    (hg38-Dec_2013)
EnsemblC4orf22 - 4q21.21 [CytoView hg19]  C4orf22 - 4q21.21 [CytoView hg38]
Mapping of homologs : NCBIC4orf22 [Mapview hg19]  C4orf22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI650567 AK128642 AY349359 BC034296 DB522959
RefSeq transcript (Entrez)NM_001206997 NM_152770
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)C4orf22
Cluster EST : UnigeneHs.527104 [ NCBI ]
CGAP (NCI)Hs.527104
Alternative Splicing GalleryENSG00000197826
Gene ExpressionC4orf22 [ NCBI-GEO ]   C4orf22 [ EBI - ARRAY_EXPRESS ]   C4orf22 [ SEEK ]   C4orf22 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255119
GTEX Portal (Tissue expression)C4orf22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6V702   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6V702  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6V702
Splice isoforms : SwissVarQ6V702
PhosPhoSitePlusQ6V702
Domains : Interpro (EBI)DUF4464   
Domain families : Pfam (Sanger)DUF4464 (PF14713)   
Domain families : Pfam (NCBI)pfam14713   
Conserved Domain (NCBI)C4orf22
DMDM Disease mutations255119
Blocks (Seattle)C4orf22
SuperfamilyQ6V702
Human Protein AtlasENSG00000197826
Peptide AtlasQ6V702
HPRD14597
IPIIPI00166701   IPI00743965   IPI00443660   IPI00966401   
Protein Interaction databases
DIP (DOE-UCLA)Q6V702
IntAct (EBI)Q6V702
FunCoupENSG00000197826
BioGRIDC4orf22
STRING (EMBL)C4orf22
ZODIACC4orf22
Ontologies - Pathways
QuickGOQ6V702
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4orf22
Atlas of Cancer Signalling NetworkC4orf22
Wikipedia pathwaysC4orf22
Orthology - Evolution
OrthoDB255119
GeneTree (enSembl)ENSG00000197826
Phylogenetic Trees/Animal Genes : TreeFamC4orf22
HOVERGENQ6V702
HOGENOMQ6V702
Homologs : HomoloGeneC4orf22
Homology/Alignments : Family Browser (UCSC)C4orf22
Gene fusions - Rearrangements
Fusion : MitelmanC4orf22/RERE [4q21.21/1p36.23]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf22
dbVarC4orf22
ClinVarC4orf22
1000_GenomesC4orf22 
Exome Variant ServerC4orf22
ExAC (Exome Aggregation Consortium)C4orf22 (select the gene name)
Genetic variants : HAPMAP255119
Genomic Variants (DGV)C4orf22 [DGVbeta]
DECIPHER (Syndromes)4:81256874-81884910  ENSG00000197826
CONAN: Copy Number AnalysisC4orf22 
Mutations
ICGC Data PortalC4orf22 
TCGA Data PortalC4orf22 
Broad Tumor PortalC4orf22
OASIS PortalC4orf22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf22
DgiDB (Drug Gene Interaction Database)C4orf22
DoCM (Curated mutations)C4orf22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf22 (select a term)
intoGenC4orf22
Cancer3DC4orf22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf22
Genetic Testing Registry C4orf22
NextProtQ6V702 [Medical]
TSGene255119
GENETestsC4orf22
Huge Navigator C4orf22 [HugePedia]
snp3D : Map Gene to Disease255119
BioCentury BCIQC4orf22
ClinGenC4orf22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255119
Chemical/Pharm GKB GenePA145008853
Clinical trialC4orf22
Miscellaneous
canSAR (ICR)C4orf22 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf22
EVEXC4orf22
GoPubMedC4orf22
iHOPC4orf22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:38 CEST 2017

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