Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C4orf26 (chromosome 4 open reading frame 26)

Identity

Alias_symbol (synonym)FLJ23657
Other aliasAI2A4
HGNC (Hugo) C4orf26
LocusID (NCBI) 152816
Atlas_Id 61195
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75556048 and ends at 75565893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C4orf26 (4q21.1) / C4orf26 (4q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf26   26300
Cards
Entrez_Gene (NCBI)C4orf26  152816  chromosome 4 open reading frame 26
AliasesAI2A4
GeneCards (Weizmann)C4orf26
Ensembl hg19 (Hinxton)ENSG00000174792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174792 [Gene_View]  chr4:75556048-75565893 [Contig_View]  C4orf26 [Vega]
ICGC DataPortalENSG00000174792
TCGA cBioPortalC4orf26
AceView (NCBI)C4orf26
Genatlas (Paris)C4orf26
WikiGenes152816
SOURCE (Princeton)C4orf26
Genetics Home Reference (NIH)C4orf26
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf26  -     chr4:75556048-75565893 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf26  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblC4orf26 - 4q21.1 [CytoView hg19]  C4orf26 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBIC4orf26 [Mapview hg19]  C4orf26 [Mapview hg38]
OMIM614829   614832   
Gene and transcription
Genbank (Entrez)AK074237 AK172776 AK300227 BC061701 BC117342
RefSeq transcript (Entrez)NM_001206981 NM_001257072 NM_178497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf26
Cluster EST : UnigeneHs.24510 [ NCBI ]
CGAP (NCI)Hs.24510
Alternative Splicing GalleryENSG00000174792
Gene ExpressionC4orf26 [ NCBI-GEO ]   C4orf26 [ EBI - ARRAY_EXPRESS ]   C4orf26 [ SEEK ]   C4orf26 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152816
GTEX Portal (Tissue expression)C4orf26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RF5
Splice isoforms : SwissVarQ17RF5
PhosPhoSitePlusQ17RF5
Domains : Interpro (EBI)DUF4721   
Domain families : Pfam (Sanger)DUF4721 (PF15848)   
Domain families : Pfam (NCBI)pfam15848   
Conserved Domain (NCBI)C4orf26
DMDM Disease mutations152816
Blocks (Seattle)C4orf26
SuperfamilyQ17RF5
Human Protein AtlasENSG00000174792
Peptide AtlasQ17RF5
HPRD08040
IPIIPI00152703   IPI00964351   IPI00911075   
Protein Interaction databases
DIP (DOE-UCLA)Q17RF5
IntAct (EBI)Q17RF5
FunCoupENSG00000174792
BioGRIDC4orf26
STRING (EMBL)C4orf26
ZODIACC4orf26
Ontologies - Pathways
QuickGOQ17RF5
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkC4orf26
Atlas of Cancer Signalling NetworkC4orf26
Wikipedia pathwaysC4orf26
Orthology - Evolution
OrthoDB152816
GeneTree (enSembl)ENSG00000174792
Phylogenetic Trees/Animal Genes : TreeFamC4orf26
HOVERGENQ17RF5
HOGENOMQ17RF5
Homologs : HomoloGeneC4orf26
Homology/Alignments : Family Browser (UCSC)C4orf26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf26
dbVarC4orf26
ClinVarC4orf26
1000_GenomesC4orf26 
Exome Variant ServerC4orf26
ExAC (Exome Aggregation Consortium)C4orf26 (select the gene name)
Genetic variants : HAPMAP152816
Genomic Variants (DGV)C4orf26 [DGVbeta]
DECIPHERC4orf26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4orf26 
Mutations
ICGC Data PortalC4orf26 
TCGA Data PortalC4orf26 
Broad Tumor PortalC4orf26
OASIS PortalC4orf26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf26
DgiDB (Drug Gene Interaction Database)C4orf26
DoCM (Curated mutations)C4orf26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf26 (select a term)
intoGenC4orf26
Cancer3DC4orf26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614829    614832   
Orphanet
MedgenC4orf26
Genetic Testing Registry C4orf26
NextProtQ17RF5 [Medical]
TSGene152816
GENETestsC4orf26
Target ValidationC4orf26
Huge Navigator C4orf26 [HugePedia]
snp3D : Map Gene to Disease152816
BioCentury BCIQC4orf26
ClinGenC4orf26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152816
Chemical/Pharm GKB GenePA145008917
Clinical trialC4orf26
Miscellaneous
canSAR (ICR)C4orf26 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf26
EVEXC4orf26
GoPubMedC4orf26
iHOPC4orf26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.