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C4orf27 (chromosome 4 open reading frame 27)

Identity

Other alias-
HGNC (Hugo) C4orf27
LocusID (NCBI) 54969
Atlas_Id 61196
Location 4q33  [Link to chromosome band 4q33]
Location_base_pair Starts at 170650619 and ends at 170679093 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf27   26051
Cards
Entrez_Gene (NCBI)C4orf27  54969  chromosome 4 open reading frame 27
Aliases
GeneCards (Weizmann)C4orf27
Ensembl hg19 (Hinxton)ENSG00000056050 [Gene_View]  chr4:170650619-170679093 [Contig_View]  C4orf27 [Vega]
Ensembl hg38 (Hinxton)ENSG00000056050 [Gene_View]  chr4:170650619-170679093 [Contig_View]  C4orf27 [Vega]
ICGC DataPortalENSG00000056050
TCGA cBioPortalC4orf27
AceView (NCBI)C4orf27
Genatlas (Paris)C4orf27
WikiGenes54969
SOURCE (Princeton)C4orf27
Genetics Home Reference (NIH)C4orf27
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf27  -     chr4:170650619-170679093 -  4q33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf27  -     4q33   [Description]    (hg38-Dec_2013)
EnsemblC4orf27 - 4q33 [CytoView hg19]  C4orf27 - 4q33 [CytoView hg38]
Mapping of homologs : NCBIC4orf27 [Mapview hg19]  C4orf27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000541 AK090742 AK124036 AL136673 AM392880
RefSeq transcript (Entrez)NM_017867
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)C4orf27
Cluster EST : UnigeneHs.406756 [ NCBI ]
CGAP (NCI)Hs.406756
Alternative Splicing GalleryENSG00000056050
Gene ExpressionC4orf27 [ NCBI-GEO ]   C4orf27 [ EBI - ARRAY_EXPRESS ]   C4orf27 [ SEEK ]   C4orf27 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54969
GTEX Portal (Tissue expression)C4orf27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWY4
Splice isoforms : SwissVarQ9NWY4
PhosPhoSitePlusQ9NWY4
Domains : Interpro (EBI)DUF2228_C2H2_APLF-like   
Domain families : Pfam (Sanger)DUF2228 (PF10228)   
Domain families : Pfam (NCBI)pfam10228   
Conserved Domain (NCBI)C4orf27
DMDM Disease mutations54969
Blocks (Seattle)C4orf27
SuperfamilyQ9NWY4
Human Protein AtlasENSG00000056050
Peptide AtlasQ9NWY4
HPRD07924
IPIIPI00016532   IPI00983006   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWY4
IntAct (EBI)Q9NWY4
FunCoupENSG00000056050
BioGRIDC4orf27
STRING (EMBL)C4orf27
ZODIACC4orf27
Ontologies - Pathways
QuickGOQ9NWY4
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkC4orf27
Atlas of Cancer Signalling NetworkC4orf27
Wikipedia pathwaysC4orf27
Orthology - Evolution
OrthoDB54969
GeneTree (enSembl)ENSG00000056050
Phylogenetic Trees/Animal Genes : TreeFamC4orf27
HOVERGENQ9NWY4
HOGENOMQ9NWY4
Homologs : HomoloGeneC4orf27
Homology/Alignments : Family Browser (UCSC)C4orf27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf27
dbVarC4orf27
ClinVarC4orf27
1000_GenomesC4orf27 
Exome Variant ServerC4orf27
ExAC (Exome Aggregation Consortium)C4orf27 (select the gene name)
Genetic variants : HAPMAP54969
Genomic Variants (DGV)C4orf27 [DGVbeta]
DECIPHER (Syndromes)4:170650619-170679093  ENSG00000056050
CONAN: Copy Number AnalysisC4orf27 
Mutations
ICGC Data PortalC4orf27 
TCGA Data PortalC4orf27 
Broad Tumor PortalC4orf27
OASIS PortalC4orf27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf27
DgiDB (Drug Gene Interaction Database)C4orf27
DoCM (Curated mutations)C4orf27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf27 (select a term)
intoGenC4orf27
Cancer3DC4orf27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf27
Genetic Testing Registry C4orf27
NextProtQ9NWY4 [Medical]
TSGene54969
GENETestsC4orf27
Huge Navigator C4orf27 [HugePedia]
snp3D : Map Gene to Disease54969
BioCentury BCIQC4orf27
ClinGenC4orf27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54969
Chemical/Pharm GKB GenePA145149735
Clinical trialC4orf27
Miscellaneous
canSAR (ICR)C4orf27 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf27
EVEXC4orf27
GoPubMedC4orf27
iHOPC4orf27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:23 CET 2017

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