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C4orf29 (chromosome 4 open reading frame 29)

Identity

Other alias-
HGNC (Hugo) C4orf29
LocusID (NCBI) 80167
Atlas_Id 61197
Location 4q28.2  [Link to chromosome band 4q28]
Location_base_pair Starts at 128886461 and ends at 128952455 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf29   26111
Cards
Entrez_Gene (NCBI)C4orf29  80167  chromosome 4 open reading frame 29
Aliases
GeneCards (Weizmann)C4orf29
Ensembl hg19 (Hinxton)ENSG00000164074 [Gene_View]  chr4:128886461-128952455 [Contig_View]  C4orf29 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164074 [Gene_View]  chr4:128886461-128952455 [Contig_View]  C4orf29 [Vega]
ICGC DataPortalENSG00000164074
TCGA cBioPortalC4orf29
AceView (NCBI)C4orf29
Genatlas (Paris)C4orf29
WikiGenes80167
SOURCE (Princeton)C4orf29
Genetics Home Reference (NIH)C4orf29
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf29  -     chr4:128886461-128952455 +  4q28.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf29  -     4q28.2   [Description]    (hg38-Dec_2013)
EnsemblC4orf29 - 4q28.2 [CytoView hg19]  C4orf29 - 4q28.2 [CytoView hg38]
Mapping of homologs : NCBIC4orf29 [Mapview hg19]  C4orf29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024759 BC034253 BC058847 BC058898 BC075793
RefSeq transcript (Entrez)NM_001039717 NM_025097
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)C4orf29
Cluster EST : UnigeneHs.445817 [ NCBI ]
CGAP (NCI)Hs.445817
Alternative Splicing GalleryENSG00000164074
Gene ExpressionC4orf29 [ NCBI-GEO ]   C4orf29 [ EBI - ARRAY_EXPRESS ]   C4orf29 [ SEEK ]   C4orf29 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80167
GTEX Portal (Tissue expression)C4orf29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P651   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P651  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P651
Splice isoforms : SwissVarQ0P651
PhosPhoSitePlusQ0P651
Domains : Interpro (EBI)AB_hydrolase    DUF2048   
Domain families : Pfam (Sanger)DUF2048 (PF09752)   
Domain families : Pfam (NCBI)pfam09752   
Conserved Domain (NCBI)C4orf29
DMDM Disease mutations80167
Blocks (Seattle)C4orf29
SuperfamilyQ0P651
Human Protein AtlasENSG00000164074
Peptide AtlasQ0P651
HPRD07953
IPIIPI00790591   IPI00937556   IPI00855986   IPI00943278   IPI00018085   IPI00968103   IPI00966147   IPI00966429   
Protein Interaction databases
DIP (DOE-UCLA)Q0P651
IntAct (EBI)Q0P651
FunCoupENSG00000164074
BioGRIDC4orf29
STRING (EMBL)C4orf29
ZODIACC4orf29
Ontologies - Pathways
QuickGOQ0P651
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC4orf29
Atlas of Cancer Signalling NetworkC4orf29
Wikipedia pathwaysC4orf29
Orthology - Evolution
OrthoDB80167
GeneTree (enSembl)ENSG00000164074
Phylogenetic Trees/Animal Genes : TreeFamC4orf29
HOVERGENQ0P651
HOGENOMQ0P651
Homologs : HomoloGeneC4orf29
Homology/Alignments : Family Browser (UCSC)C4orf29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf29
dbVarC4orf29
ClinVarC4orf29
1000_GenomesC4orf29 
Exome Variant ServerC4orf29
ExAC (Exome Aggregation Consortium)C4orf29 (select the gene name)
Genetic variants : HAPMAP80167
Genomic Variants (DGV)C4orf29 [DGVbeta]
DECIPHER (Syndromes)4:128886461-128952455  ENSG00000164074
CONAN: Copy Number AnalysisC4orf29 
Mutations
ICGC Data PortalC4orf29 
TCGA Data PortalC4orf29 
Broad Tumor PortalC4orf29
OASIS PortalC4orf29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf29
DgiDB (Drug Gene Interaction Database)C4orf29
DoCM (Curated mutations)C4orf29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf29 (select a term)
intoGenC4orf29
Cancer3DC4orf29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf29
Genetic Testing Registry C4orf29
NextProtQ0P651 [Medical]
TSGene80167
GENETestsC4orf29
Huge Navigator C4orf29 [HugePedia]
snp3D : Map Gene to Disease80167
BioCentury BCIQC4orf29
ClinGenC4orf29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80167
Chemical/Pharm GKB GenePA147358673
Clinical trialC4orf29
Miscellaneous
canSAR (ICR)C4orf29 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf29
EVEXC4orf29
GoPubMedC4orf29
iHOPC4orf29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:23 CET 2017

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