Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C4orf3 (chromosome 4 open reading frame 3)

Identity

Other aliasHCVFTP1
HGNC (Hugo) C4orf3
LocusID (NCBI) 401152
Atlas_Id 61198
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 119296419 and ends at 119300813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C4orf3 (4q26) / ECT2 (3q26.31)FABP2 (4q26) / C4orf3 (4q26)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf3   19225
Cards
Entrez_Gene (NCBI)C4orf3  401152  chromosome 4 open reading frame 3
AliasesHCVFTP1
GeneCards (Weizmann)C4orf3
Ensembl hg19 (Hinxton)ENSG00000164096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164096 [Gene_View]  chr4:119296419-119300813 [Contig_View]  C4orf3 [Vega]
ICGC DataPortalENSG00000164096
TCGA cBioPortalC4orf3
AceView (NCBI)C4orf3
Genatlas (Paris)C4orf3
WikiGenes401152
SOURCE (Princeton)C4orf3
Genetics Home Reference (NIH)C4orf3
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf3  -     chr4:119296419-119300813 -  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf3  -     4q26   [Description]    (hg19-Feb_2009)
EnsemblC4orf3 - 4q26 [CytoView hg19]  C4orf3 - 4q26 [CytoView hg38]
Mapping of homologs : NCBIC4orf3 [Mapview hg19]  C4orf3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF075061 AK024537 AK025703 AY605045 BC017399
RefSeq transcript (Entrez)NM_001001701 NM_001170330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf3
Cluster EST : UnigeneHs.173705 [ NCBI ]
CGAP (NCI)Hs.173705
Alternative Splicing GalleryENSG00000164096
Gene ExpressionC4orf3 [ NCBI-GEO ]   C4orf3 [ EBI - ARRAY_EXPRESS ]   C4orf3 [ SEEK ]   C4orf3 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401152
GTEX Portal (Tissue expression)C4orf3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVX3
Splice isoforms : SwissVarQ8WVX3
PhosPhoSitePlusQ8WVX3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C4orf3
DMDM Disease mutations401152
Blocks (Seattle)C4orf3
SuperfamilyQ8WVX3
Human Protein AtlasENSG00000164096
Peptide AtlasQ8WVX3
HPRD14223
IPIIPI00872615   IPI00103259   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVX3
IntAct (EBI)Q8WVX3
FunCoupENSG00000164096
BioGRIDC4orf3
STRING (EMBL)C4orf3
ZODIACC4orf3
Ontologies - Pathways
QuickGOQ8WVX3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC4orf3
Atlas of Cancer Signalling NetworkC4orf3
Wikipedia pathwaysC4orf3
Orthology - Evolution
OrthoDB401152
GeneTree (enSembl)ENSG00000164096
Phylogenetic Trees/Animal Genes : TreeFamC4orf3
HOVERGENQ8WVX3
HOGENOMQ8WVX3
Homologs : HomoloGeneC4orf3
Homology/Alignments : Family Browser (UCSC)C4orf3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf3
dbVarC4orf3
ClinVarC4orf3
1000_GenomesC4orf3 
Exome Variant ServerC4orf3
ExAC (Exome Aggregation Consortium)C4orf3 (select the gene name)
Genetic variants : HAPMAP401152
Genomic Variants (DGV)C4orf3 [DGVbeta]
DECIPHERC4orf3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4orf3 
Mutations
ICGC Data PortalC4orf3 
TCGA Data PortalC4orf3 
Broad Tumor PortalC4orf3
OASIS PortalC4orf3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf3
DgiDB (Drug Gene Interaction Database)C4orf3
DoCM (Curated mutations)C4orf3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf3 (select a term)
intoGenC4orf3
Cancer3DC4orf3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf3
Genetic Testing Registry C4orf3
NextProtQ8WVX3 [Medical]
TSGene401152
GENETestsC4orf3
Target ValidationC4orf3
Huge Navigator C4orf3 [HugePedia]
snp3D : Map Gene to Disease401152
BioCentury BCIQC4orf3
ClinGenC4orf3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401152
Chemical/Pharm GKB GenePA164717306
Clinical trialC4orf3
Miscellaneous
canSAR (ICR)C4orf3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf3
EVEXC4orf3
GoPubMedC4orf3
iHOPC4orf3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:17 CEST 2017

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