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C4orf36 (chromosome 4 open reading frame 36)

Identity

Alias_symbol (synonym)MGC26744
Other alias-
HGNC (Hugo) C4orf36
LocusID (NCBI) 132989
Atlas_Id 41353
Location 4q21.3  [Link to chromosome band 4q21]
Location_base_pair Starts at 87797358 and ends at 87813575 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf36   28386
Cards
Entrez_Gene (NCBI)C4orf36  132989  chromosome 4 open reading frame 36
Aliases
GeneCards (Weizmann)C4orf36
Ensembl hg19 (Hinxton)ENSG00000163633 [Gene_View]  chr4:87797358-87813575 [Contig_View]  C4orf36 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163633 [Gene_View]  chr4:87797358-87813575 [Contig_View]  C4orf36 [Vega]
ICGC DataPortalENSG00000163633
TCGA cBioPortalC4orf36
AceView (NCBI)C4orf36
Genatlas (Paris)C4orf36
WikiGenes132989
SOURCE (Princeton)C4orf36
Genetics Home Reference (NIH)C4orf36
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf36  -     chr4:87797358-87813575 -  4q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf36  -     4q21.3   [Description]    (hg38-Dec_2013)
EnsemblC4orf36 - 4q21.3 [CytoView hg19]  C4orf36 - 4q21.3 [CytoView hg38]
Mapping of homologs : NCBIC4orf36 [Mapview hg19]  C4orf36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC016746 BC063410 BP289794 BX090513
RefSeq transcript (Entrez)NM_144645
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)C4orf36
Cluster EST : UnigeneHs.339646 [ NCBI ]
CGAP (NCI)Hs.339646
Alternative Splicing GalleryENSG00000163633
Gene ExpressionC4orf36 [ NCBI-GEO ]   C4orf36 [ EBI - ARRAY_EXPRESS ]   C4orf36 [ SEEK ]   C4orf36 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132989
GTEX Portal (Tissue expression)C4orf36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KX1
Splice isoforms : SwissVarQ96KX1
PhosPhoSitePlusQ96KX1
Domains : Interpro (EBI)DUF4522   
Domain families : Pfam (Sanger)DUF4522 (PF15022)   
Domain families : Pfam (NCBI)pfam15022   
Conserved Domain (NCBI)C4orf36
DMDM Disease mutations132989
Blocks (Seattle)C4orf36
SuperfamilyQ96KX1
Human Protein AtlasENSG00000163633
Peptide AtlasQ96KX1
HPRD14511
IPIIPI00064894   IPI00967480   IPI00964157   IPI00967308   IPI00967747   IPI00964705   
Protein Interaction databases
DIP (DOE-UCLA)Q96KX1
IntAct (EBI)Q96KX1
FunCoupENSG00000163633
BioGRIDC4orf36
STRING (EMBL)C4orf36
ZODIACC4orf36
Ontologies - Pathways
QuickGOQ96KX1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4orf36
Atlas of Cancer Signalling NetworkC4orf36
Wikipedia pathwaysC4orf36
Orthology - Evolution
OrthoDB132989
GeneTree (enSembl)ENSG00000163633
Phylogenetic Trees/Animal Genes : TreeFamC4orf36
HOVERGENQ96KX1
HOGENOMQ96KX1
Homologs : HomoloGeneC4orf36
Homology/Alignments : Family Browser (UCSC)C4orf36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf36
dbVarC4orf36
ClinVarC4orf36
1000_GenomesC4orf36 
Exome Variant ServerC4orf36
ExAC (Exome Aggregation Consortium)C4orf36 (select the gene name)
Genetic variants : HAPMAP132989
Genomic Variants (DGV)C4orf36 [DGVbeta]
DECIPHER (Syndromes)4:87797358-87813575  ENSG00000163633
CONAN: Copy Number AnalysisC4orf36 
Mutations
ICGC Data PortalC4orf36 
TCGA Data PortalC4orf36 
Broad Tumor PortalC4orf36
OASIS PortalC4orf36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf36
DgiDB (Drug Gene Interaction Database)C4orf36
DoCM (Curated mutations)C4orf36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf36 (select a term)
intoGenC4orf36
Cancer3DC4orf36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf36
Genetic Testing Registry C4orf36
NextProtQ96KX1 [Medical]
TSGene132989
GENETestsC4orf36
Huge Navigator C4orf36 [HugePedia]
snp3D : Map Gene to Disease132989
BioCentury BCIQC4orf36
ClinGenC4orf36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132989
Chemical/Pharm GKB GenePA162379784
Clinical trialC4orf36
Miscellaneous
canSAR (ICR)C4orf36 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf36
EVEXC4orf36
GoPubMedC4orf36
iHOPC4orf36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:17 CET 2017

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