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C4orf45 (chromosome 4 open reading frame 45)

Identity

Alias_symbol (synonym)FLJ25371
Other alias-
HGNC (Hugo) C4orf45
LocusID (NCBI) 152940
Atlas_Id 61201
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 158893532 and ends at 159035181 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C4orf45 (4q32.1) / TEX101 (19q13.31)ELF1 (13q14.11) / C4orf45 (4q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf45   26342
Cards
Entrez_Gene (NCBI)C4orf45  152940  chromosome 4 open reading frame 45
Aliases
GeneCards (Weizmann)C4orf45
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:158893532-159035181 [Contig_View]  C4orf45 [Vega]
TCGA cBioPortalC4orf45
AceView (NCBI)C4orf45
Genatlas (Paris)C4orf45
WikiGenes152940
SOURCE (Princeton)C4orf45
Genetics Home Reference (NIH)C4orf45
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf45  -     chr4:158893532-159035181 -  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf45  -     4q32.1   [Description]    (hg19-Feb_2009)
EnsemblC4orf45 - 4q32.1 [CytoView hg19]  C4orf45 - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBIC4orf45 [Mapview hg19]  C4orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058100 AK307319 BC172327 BP369394 DB037602
RefSeq transcript (Entrez)NM_152543
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf45
Cluster EST : UnigeneHs.415576 [ NCBI ]
CGAP (NCI)Hs.415576
Gene ExpressionC4orf45 [ NCBI-GEO ]   C4orf45 [ EBI - ARRAY_EXPRESS ]   C4orf45 [ SEEK ]   C4orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152940
GTEX Portal (Tissue expression)C4orf45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LM5
Splice isoforms : SwissVarQ96LM5
PhosPhoSitePlusQ96LM5
Domains : Interpro (EBI)DUF4562   
Domain families : Pfam (Sanger)DUF4562 (PF15123)   
Domain families : Pfam (NCBI)pfam15123   
Conserved Domain (NCBI)C4orf45
DMDM Disease mutations152940
Blocks (Seattle)C4orf45
SuperfamilyQ96LM5
Peptide AtlasQ96LM5
HPRD08058
IPIIPI00873240   
Protein Interaction databases
DIP (DOE-UCLA)Q96LM5
IntAct (EBI)Q96LM5
BioGRIDC4orf45
STRING (EMBL)C4orf45
ZODIACC4orf45
Ontologies - Pathways
QuickGOQ96LM5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4orf45
Atlas of Cancer Signalling NetworkC4orf45
Wikipedia pathwaysC4orf45
Orthology - Evolution
OrthoDB152940
Phylogenetic Trees/Animal Genes : TreeFamC4orf45
HOVERGENQ96LM5
HOGENOMQ96LM5
Homologs : HomoloGeneC4orf45
Homology/Alignments : Family Browser (UCSC)C4orf45
Gene fusions - Rearrangements
Tumor Fusion PortalC4orf45
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf45
dbVarC4orf45
ClinVarC4orf45
1000_GenomesC4orf45 
Exome Variant ServerC4orf45
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP152940
Genomic Variants (DGV)C4orf45 [DGVbeta]
DECIPHERC4orf45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4orf45 
Mutations
ICGC Data PortalC4orf45 
TCGA Data PortalC4orf45 
Broad Tumor PortalC4orf45
OASIS PortalC4orf45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf45
DgiDB (Drug Gene Interaction Database)C4orf45
DoCM (Curated mutations)C4orf45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf45 (select a term)
intoGenC4orf45
Cancer3DC4orf45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC4orf45
MedgenC4orf45
Genetic Testing Registry C4orf45
NextProtQ96LM5 [Medical]
TSGene152940
GENETestsC4orf45
Target ValidationC4orf45
Huge Navigator C4orf45 [HugePedia]
snp3D : Map Gene to Disease152940
BioCentury BCIQC4orf45
ClinGenC4orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152940
Chemical/Pharm GKB GenePA162379953
Clinical trialC4orf45
Miscellaneous
canSAR (ICR)C4orf45 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf45
EVEXC4orf45
GoPubMedC4orf45
iHOPC4orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:09:39 CET 2017

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