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C4orf46 (chromosome 4 open reading frame 46)

Identity

Alias_symbol (synonym)LOC201725
RCDG1
Other alias
HGNC (Hugo) C4orf46
LocusID (NCBI) 201725
Atlas_Id 55183
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 159587827 and ends at 159593202 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C4orf46 (4q32.1) / FAM188A (10p13)C4orf46 (4q32.1) / TNFAIP8L2-SCNM1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf46   27320
Cards
Entrez_Gene (NCBI)C4orf46  201725  chromosome 4 open reading frame 46
AliasesRCDG1
GeneCards (Weizmann)C4orf46
Ensembl hg19 (Hinxton)ENSG00000205208 [Gene_View]  chr4:159587827-159593202 [Contig_View]  C4orf46 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205208 [Gene_View]  chr4:159587827-159593202 [Contig_View]  C4orf46 [Vega]
ICGC DataPortalENSG00000205208
TCGA cBioPortalC4orf46
AceView (NCBI)C4orf46
Genatlas (Paris)C4orf46
WikiGenes201725
SOURCE (Princeton)C4orf46
Genetics Home Reference (NIH)C4orf46
Genomic and cartography
GoldenPath hg19 (UCSC)C4orf46  -     chr4:159587827-159593202 -  4q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C4orf46  -     4q32.1   [Description]    (hg38-Dec_2013)
EnsemblC4orf46 - 4q32.1 [CytoView hg19]  C4orf46 - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBIC4orf46 [Mapview hg19]  C4orf46 [Mapview hg38]
OMIM616210   
Gene and transcription
Genbank (Entrez)AK027539 AK074948 AK311718 BC065017 BC094775
RefSeq transcript (Entrez)NM_001008393
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_033150 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)C4orf46
Cluster EST : UnigeneHs.735449 [ NCBI ]
CGAP (NCI)Hs.735449
Alternative Splicing GalleryENSG00000205208
Gene ExpressionC4orf46 [ NCBI-GEO ]   C4orf46 [ EBI - ARRAY_EXPRESS ]   C4orf46 [ SEEK ]   C4orf46 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201725
GTEX Portal (Tissue expression)C4orf46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ504U0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ504U0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ504U0
Splice isoforms : SwissVarQ504U0
PhosPhoSitePlusQ504U0
Domains : Interpro (EBI)RCDG1   
Domain families : Pfam (Sanger)DUF4676 (PF15725)   
Domain families : Pfam (NCBI)pfam15725   
Conserved Domain (NCBI)C4orf46
DMDM Disease mutations201725
Blocks (Seattle)C4orf46
SuperfamilyQ504U0
Human Protein AtlasENSG00000205208
Peptide AtlasQ504U0
HPRD17319
IPIIPI00145726   IPI00966288   
Protein Interaction databases
DIP (DOE-UCLA)Q504U0
IntAct (EBI)Q504U0
FunCoupENSG00000205208
BioGRIDC4orf46
STRING (EMBL)C4orf46
ZODIACC4orf46
Ontologies - Pathways
QuickGOQ504U0
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkC4orf46
Atlas of Cancer Signalling NetworkC4orf46
Wikipedia pathwaysC4orf46
Orthology - Evolution
OrthoDB201725
GeneTree (enSembl)ENSG00000205208
Phylogenetic Trees/Animal Genes : TreeFamC4orf46
HOVERGENQ504U0
HOGENOMQ504U0
Homologs : HomoloGeneC4orf46
Homology/Alignments : Family Browser (UCSC)C4orf46
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf46
dbVarC4orf46
ClinVarC4orf46
1000_GenomesC4orf46 
Exome Variant ServerC4orf46
ExAC (Exome Aggregation Consortium)C4orf46 (select the gene name)
Genetic variants : HAPMAP201725
Genomic Variants (DGV)C4orf46 [DGVbeta]
DECIPHER (Syndromes)4:159587827-159593202  ENSG00000205208
CONAN: Copy Number AnalysisC4orf46 
Mutations
ICGC Data PortalC4orf46 
TCGA Data PortalC4orf46 
Broad Tumor PortalC4orf46
OASIS PortalC4orf46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf46
DgiDB (Drug Gene Interaction Database)C4orf46
DoCM (Curated mutations)C4orf46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf46 (select a term)
intoGenC4orf46
Cancer3DC4orf46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616210   
Orphanet
MedgenC4orf46
Genetic Testing Registry C4orf46
NextProtQ504U0 [Medical]
TSGene201725
GENETestsC4orf46
Huge Navigator C4orf46 [HugePedia]
snp3D : Map Gene to Disease201725
BioCentury BCIQC4orf46
ClinGenC4orf46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201725
Chemical/Pharm GKB GenePA162379968
Clinical trialC4orf46
Miscellaneous
canSAR (ICR)C4orf46 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf46
EVEXC4orf46
GoPubMedC4orf46
iHOPC4orf46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:38 CEST 2017

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