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C4orf47 (chromosome 4 open reading frame 47)

Identity

Alias_symbol (synonym)LOC441054
Other alias-
HGNC (Hugo) C4orf47
LocusID (NCBI) 441054
Atlas_Id 61203
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185429334 and ends at 185449828 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf47   34346
Cards
Entrez_Gene (NCBI)C4orf47  441054  chromosome 4 open reading frame 47
Aliases
GeneCards (Weizmann)C4orf47
Ensembl hg19 (Hinxton)ENSG00000205129 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205129 [Gene_View]  chr4:185429334-185449828 [Contig_View]  C4orf47 [Vega]
ICGC DataPortalENSG00000205129
TCGA cBioPortalC4orf47
AceView (NCBI)C4orf47
Genatlas (Paris)C4orf47
WikiGenes441054
SOURCE (Princeton)C4orf47
Genetics Home Reference (NIH)C4orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf47  -     chr4:185429334-185449828 +  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf47  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblC4orf47 - 4q35.1 [CytoView hg19]  C4orf47 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBIC4orf47 [Mapview hg19]  C4orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY947525 BC127739 BC141967 BC141968 BC150574
RefSeq transcript (Entrez)NM_001114357 NM_001346007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf47
Cluster EST : UnigeneHs.549398 [ NCBI ]
CGAP (NCI)Hs.549398
Alternative Splicing GalleryENSG00000205129
Gene ExpressionC4orf47 [ NCBI-GEO ]   C4orf47 [ EBI - ARRAY_EXPRESS ]   C4orf47 [ SEEK ]   C4orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441054
GTEX Portal (Tissue expression)C4orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtA7E2U8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA7E2U8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA7E2U8
Splice isoforms : SwissVarA7E2U8
PhosPhoSitePlusA7E2U8
Domains : Interpro (EBI)DUF4586   
Domain families : Pfam (Sanger)DUF4586 (PF15239)   
Domain families : Pfam (NCBI)pfam15239   
Conserved Domain (NCBI)C4orf47
DMDM Disease mutations441054
Blocks (Seattle)C4orf47
SuperfamilyA7E2U8
Human Protein AtlasENSG00000205129
Peptide AtlasA7E2U8
IPIIPI00456578   IPI00966564   IPI00965441   IPI00967125   
Protein Interaction databases
DIP (DOE-UCLA)A7E2U8
IntAct (EBI)A7E2U8
FunCoupENSG00000205129
BioGRIDC4orf47
STRING (EMBL)C4orf47
ZODIACC4orf47
Ontologies - Pathways
QuickGOA7E2U8
Ontology : AmiGOcytoplasm  centrosome  
Ontology : EGO-EBIcytoplasm  centrosome  
NDEx NetworkC4orf47
Atlas of Cancer Signalling NetworkC4orf47
Wikipedia pathwaysC4orf47
Orthology - Evolution
OrthoDB441054
GeneTree (enSembl)ENSG00000205129
Phylogenetic Trees/Animal Genes : TreeFamC4orf47
HOVERGENA7E2U8
HOGENOMA7E2U8
Homologs : HomoloGeneC4orf47
Homology/Alignments : Family Browser (UCSC)C4orf47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf47
dbVarC4orf47
ClinVarC4orf47
1000_GenomesC4orf47 
Exome Variant ServerC4orf47
ExAC (Exome Aggregation Consortium)C4orf47 (select the gene name)
Genetic variants : HAPMAP441054
Genomic Variants (DGV)C4orf47 [DGVbeta]
DECIPHERC4orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4orf47 
Mutations
ICGC Data PortalC4orf47 
TCGA Data PortalC4orf47 
Broad Tumor PortalC4orf47
OASIS PortalC4orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf47
DgiDB (Drug Gene Interaction Database)C4orf47
DoCM (Curated mutations)C4orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf47 (select a term)
intoGenC4orf47
Cancer3DC4orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf47
Genetic Testing Registry C4orf47
NextProtA7E2U8 [Medical]
TSGene441054
GENETestsC4orf47
Target ValidationC4orf47
Huge Navigator C4orf47 [HugePedia]
snp3D : Map Gene to Disease441054
BioCentury BCIQC4orf47
ClinGenC4orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441054
Chemical/Pharm GKB GenePA162379983
Clinical trialC4orf47
Miscellaneous
canSAR (ICR)C4orf47 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf47
EVEXC4orf47
GoPubMedC4orf47
iHOPC4orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:22 CEST 2017

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