Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C4orf50 (chromosome 4 open reading frame 50)

Identity

Alias_symbol (synonym)FLJ46481
Other alias-
HGNC (Hugo) C4orf50
LocusID (NCBI) 389197
Atlas_Id 61205
Location 4p16.2  [Link to chromosome band 4p16]
Location_base_pair Starts at 5957118 and ends at 5988439 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C4orf50   33766
Cards
Entrez_Gene (NCBI)C4orf50  389197  chromosome 4 open reading frame 50
Aliases
GeneCards (Weizmann)C4orf50
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:5957118-5988439 [Contig_View]  C4orf50 [Vega]
TCGA cBioPortalC4orf50
AceView (NCBI)C4orf50
Genatlas (Paris)C4orf50
WikiGenes389197
SOURCE (Princeton)C4orf50
Genetics Home Reference (NIH)C4orf50
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf50  -     chr4:5957118-5988439 -  4p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf50  -     4p16.2   [Description]    (hg19-Feb_2009)
EnsemblC4orf50 - 4p16.2 [CytoView hg19]  C4orf50 - 4p16.2 [CytoView hg38]
Mapping of homologs : NCBIC4orf50 [Mapview hg19]  C4orf50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128339 BC140710
RefSeq transcript (Entrez)NM_207405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf50
Cluster EST : UnigeneHs.479065 [ NCBI ]
CGAP (NCI)Hs.479065
Gene ExpressionC4orf50 [ NCBI-GEO ]   C4orf50 [ EBI - ARRAY_EXPRESS ]   C4orf50 [ SEEK ]   C4orf50 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389197
GTEX Portal (Tissue expression)C4orf50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRC1
Splice isoforms : SwissVarQ6ZRC1
PhosPhoSitePlusQ6ZRC1
Domains : Interpro (EBI)DUF4527   
Domain families : Pfam (Sanger)DUF4527 (PF15030)   
Domain families : Pfam (NCBI)pfam15030   
Conserved Domain (NCBI)C4orf50
DMDM Disease mutations389197
Blocks (Seattle)C4orf50
SuperfamilyQ6ZRC1
Peptide AtlasQ6ZRC1
HPRD13538
IPIIPI00983603   IPI00784092   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRC1
IntAct (EBI)Q6ZRC1
BioGRIDC4orf50
STRING (EMBL)C4orf50
ZODIACC4orf50
Ontologies - Pathways
QuickGOQ6ZRC1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4orf50
Atlas of Cancer Signalling NetworkC4orf50
Wikipedia pathwaysC4orf50
Orthology - Evolution
OrthoDB389197
Phylogenetic Trees/Animal Genes : TreeFamC4orf50
HOVERGENQ6ZRC1
HOGENOMQ6ZRC1
Homologs : HomoloGeneC4orf50
Homology/Alignments : Family Browser (UCSC)C4orf50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf50
dbVarC4orf50
ClinVarC4orf50
1000_GenomesC4orf50 
Exome Variant ServerC4orf50
ExAC (Exome Aggregation Consortium)C4orf50 (select the gene name)
Genetic variants : HAPMAP389197
Genomic Variants (DGV)C4orf50 [DGVbeta]
DECIPHERC4orf50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4orf50 
Mutations
ICGC Data PortalC4orf50 
TCGA Data PortalC4orf50 
Broad Tumor PortalC4orf50
OASIS PortalC4orf50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf50
DgiDB (Drug Gene Interaction Database)C4orf50
DoCM (Curated mutations)C4orf50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf50 (select a term)
intoGenC4orf50
Cancer3DC4orf50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf50
Genetic Testing Registry C4orf50
NextProtQ6ZRC1 [Medical]
TSGene389197
GENETestsC4orf50
Target ValidationC4orf50
Huge Navigator C4orf50 [HugePedia]
snp3D : Map Gene to Disease389197
BioCentury BCIQC4orf50
ClinGenC4orf50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389197
Chemical/Pharm GKB GenePA165663217
Clinical trialC4orf50
Miscellaneous
canSAR (ICR)C4orf50 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf50
EVEXC4orf50
GoPubMedC4orf50
iHOPC4orf50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:41:19 CEST 2017

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