Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C4orf51 (chromosome 4 open reading frame 51)

Identity

Other alias-
HGNC (Hugo) C4orf51
LocusID (NCBI) 646603
Atlas_Id 61206
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 145680204 and ends at 145732796 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C4orf51   37264
Cards
Entrez_Gene (NCBI)C4orf51  646603  chromosome 4 open reading frame 51
Aliases
GeneCards (Weizmann)C4orf51
Ensembl hg19 (Hinxton)ENSG00000237136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237136 [Gene_View]  chr4:145680204-145732796 [Contig_View]  C4orf51 [Vega]
ICGC DataPortalENSG00000237136
TCGA cBioPortalC4orf51
AceView (NCBI)C4orf51
Genatlas (Paris)C4orf51
WikiGenes646603
SOURCE (Princeton)C4orf51
Genetics Home Reference (NIH)C4orf51
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf51  -     chr4:145680204-145732796 +  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf51  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblC4orf51 - 4q31.21 [CytoView hg19]  C4orf51 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIC4orf51 [Mapview hg19]  C4orf51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf51
Cluster EST : UnigeneHs.452865 [ NCBI ]
CGAP (NCI)Hs.452865
Alternative Splicing GalleryENSG00000237136
Gene ExpressionC4orf51 [ NCBI-GEO ]   C4orf51 [ EBI - ARRAY_EXPRESS ]   C4orf51 [ SEEK ]   C4orf51 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646603
GTEX Portal (Tissue expression)C4orf51
Human Protein AtlasENSG00000237136-C4orf51 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J302   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J302  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J302
Splice isoforms : SwissVarC9J302
PhosPhoSitePlusC9J302
Domains : Interpro (EBI)DUF4722   
Domain families : Pfam (Sanger)DUF4722 (PF15849)   
Domain families : Pfam (NCBI)pfam15849   
Conserved Domain (NCBI)C4orf51
DMDM Disease mutations646603
Blocks (Seattle)C4orf51
SuperfamilyC9J302
Human Protein Atlas [tissue]ENSG00000237136-C4orf51 [tissue]
Peptide AtlasC9J302
IPIIPI00827692   
Protein Interaction databases
DIP (DOE-UCLA)C9J302
IntAct (EBI)C9J302
FunCoupENSG00000237136
BioGRIDC4orf51
STRING (EMBL)C4orf51
ZODIACC4orf51
Ontologies - Pathways
QuickGOC9J302
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC4orf51
Atlas of Cancer Signalling NetworkC4orf51
Wikipedia pathwaysC4orf51
Orthology - Evolution
OrthoDB646603
GeneTree (enSembl)ENSG00000237136
Phylogenetic Trees/Animal Genes : TreeFamC4orf51
HOVERGENC9J302
HOGENOMC9J302
Homologs : HomoloGeneC4orf51
Homology/Alignments : Family Browser (UCSC)C4orf51
Gene fusions - Rearrangements
Fusion: Tumor Portal C4orf51
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC4orf51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C4orf51
dbVarC4orf51
ClinVarC4orf51
1000_GenomesC4orf51 
Exome Variant ServerC4orf51
ExAC (Exome Aggregation Consortium)ENSG00000237136
GNOMAD BrowserENSG00000237136
Genetic variants : HAPMAP646603
Genomic Variants (DGV)C4orf51 [DGVbeta]
DECIPHERC4orf51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC4orf51 
Mutations
ICGC Data PortalC4orf51 
TCGA Data PortalC4orf51 
Broad Tumor PortalC4orf51
OASIS PortalC4orf51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC4orf51  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC4orf51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C4orf51
DgiDB (Drug Gene Interaction Database)C4orf51
DoCM (Curated mutations)C4orf51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C4orf51 (select a term)
intoGenC4orf51
Cancer3DC4orf51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC4orf51
Genetic Testing Registry C4orf51
NextProtC9J302 [Medical]
TSGene646603
GENETestsC4orf51
Target ValidationC4orf51
Huge Navigator C4orf51 [HugePedia]
snp3D : Map Gene to Disease646603
BioCentury BCIQC4orf51
ClinGenC4orf51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646603
Chemical/Pharm GKB GenePA165663246
Clinical trialC4orf51
Miscellaneous
canSAR (ICR)C4orf51 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf51
EVEXC4orf51
GoPubMedC4orf51
iHOPC4orf51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:36 CET 2017

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