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C5orf15 (chromosome 5 open reading frame 15)

Identity

Alias_symbol (synonym)KCT2
HTGN29
Other alias
HGNC (Hugo) C5orf15
LocusID (NCBI) 56951
Atlas_Id 61208
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 133291198 and ends at 133304406 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C5orf15 (5q31.1) / PCLO (7q21.11)C5orf15 (5q31.1) / PRKAA1 (5p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf15   20656
Cards
Entrez_Gene (NCBI)C5orf15  56951  chromosome 5 open reading frame 15
AliasesHTGN29; KCT2
GeneCards (Weizmann)C5orf15
Ensembl hg19 (Hinxton)ENSG00000113583 [Gene_View]  chr5:133291198-133304406 [Contig_View]  C5orf15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113583 [Gene_View]  chr5:133291198-133304406 [Contig_View]  C5orf15 [Vega]
ICGC DataPortalENSG00000113583
TCGA cBioPortalC5orf15
AceView (NCBI)C5orf15
Genatlas (Paris)C5orf15
WikiGenes56951
SOURCE (Princeton)C5orf15
Genetics Home Reference (NIH)C5orf15
Genomic and cartography
GoldenPath hg19 (UCSC)C5orf15  -     chr5:133291198-133304406 -  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C5orf15  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblC5orf15 - 5q31.1 [CytoView hg19]  C5orf15 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIC5orf15 [Mapview hg19]  C5orf15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035313 AF226055 AK074963 AK298515 AK315362
RefSeq transcript (Entrez)NM_020199
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)C5orf15
Cluster EST : UnigeneHs.744034 [ NCBI ]
CGAP (NCI)Hs.744034
Alternative Splicing GalleryENSG00000113583
Gene ExpressionC5orf15 [ NCBI-GEO ]   C5orf15 [ EBI - ARRAY_EXPRESS ]   C5orf15 [ SEEK ]   C5orf15 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56951
GTEX Portal (Tissue expression)C5orf15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC54
Splice isoforms : SwissVarQ8NC54
PhosPhoSitePlusQ8NC54
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf15
DMDM Disease mutations56951
Blocks (Seattle)C5orf15
SuperfamilyQ8NC54
Human Protein AtlasENSG00000113583
Peptide AtlasQ8NC54
HPRD12829
IPIIPI00550571   IPI00908756   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC54
IntAct (EBI)Q8NC54
FunCoupENSG00000113583
BioGRIDC5orf15
STRING (EMBL)C5orf15
ZODIACC5orf15
Ontologies - Pathways
QuickGOQ8NC54
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC5orf15
Atlas of Cancer Signalling NetworkC5orf15
Wikipedia pathwaysC5orf15
Orthology - Evolution
OrthoDB56951
GeneTree (enSembl)ENSG00000113583
Phylogenetic Trees/Animal Genes : TreeFamC5orf15
HOVERGENQ8NC54
HOGENOMQ8NC54
Homologs : HomoloGeneC5orf15
Homology/Alignments : Family Browser (UCSC)C5orf15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf15
dbVarC5orf15
ClinVarC5orf15
1000_GenomesC5orf15 
Exome Variant ServerC5orf15
ExAC (Exome Aggregation Consortium)C5orf15 (select the gene name)
Genetic variants : HAPMAP56951
Genomic Variants (DGV)C5orf15 [DGVbeta]
DECIPHER (Syndromes)5:133291198-133304406  ENSG00000113583
CONAN: Copy Number AnalysisC5orf15 
Mutations
ICGC Data PortalC5orf15 
TCGA Data PortalC5orf15 
Broad Tumor PortalC5orf15
OASIS PortalC5orf15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf15
DgiDB (Drug Gene Interaction Database)C5orf15
DoCM (Curated mutations)C5orf15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf15 (select a term)
intoGenC5orf15
Cancer3DC5orf15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf15
Genetic Testing Registry C5orf15
NextProtQ8NC54 [Medical]
TSGene56951
GENETestsC5orf15
Huge Navigator C5orf15 [HugePedia]
snp3D : Map Gene to Disease56951
BioCentury BCIQC5orf15
ClinGenC5orf15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56951
Chemical/Pharm GKB GenePA134898147
Clinical trialC5orf15
Miscellaneous
canSAR (ICR)C5orf15 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf15
EVEXC5orf15
GoPubMedC5orf15
iHOPC5orf15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:25 CET 2017

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