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C5orf17 (chromosome 5 open reading frame 17)

Identity

Alias_symbol (synonym)FLJ34836
Other alias-
HGNC (Hugo) C5orf17
LocusID (NCBI) 439936
Atlas_Id 61209
Location 5p14.2  [Link to chromosome band 5p14]
Location_base_pair Starts at 23951348 and ends at 24178265 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf17   26630
Cards
Entrez_Gene (NCBI)C5orf17  439936  chromosome 5 open reading frame 17
Aliases
GeneCards (Weizmann)C5orf17
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:23951348-24178265 [Contig_View]  C5orf17 [Vega]
TCGA cBioPortalC5orf17
AceView (NCBI)C5orf17
Genatlas (Paris)C5orf17
WikiGenes439936
SOURCE (Princeton)C5orf17
Genetics Home Reference (NIH)C5orf17
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf17  -     chr5:23951348-24178265 +  5p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf17  -     5p14.2   [Description]    (hg19-Feb_2009)
EnsemblC5orf17 - 5p14.2 [CytoView hg19]  C5orf17 - 5p14.2 [CytoView hg38]
Mapping of homologs : NCBIC5orf17 [Mapview hg19]  C5orf17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092155 BI198197 BM988139 BQ950913 DQ323997
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf17
Cluster EST : UnigeneHs.638078 [ NCBI ]
CGAP (NCI)Hs.638078
Gene ExpressionC5orf17 [ NCBI-GEO ]   C5orf17 [ EBI - ARRAY_EXPRESS ]   C5orf17 [ SEEK ]   C5orf17 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439936
GTEX Portal (Tissue expression)C5orf17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAS9
Splice isoforms : SwissVarQ8NAS9
PhosPhoSitePlusQ8NAS9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf17
DMDM Disease mutations439936
Blocks (Seattle)C5orf17
SuperfamilyQ8NAS9
Peptide AtlasQ8NAS9
IPIIPI00168105   IPI00847449   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAS9
IntAct (EBI)Q8NAS9
BioGRIDC5orf17
STRING (EMBL)C5orf17
ZODIACC5orf17
Ontologies - Pathways
QuickGOQ8NAS9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC5orf17
Atlas of Cancer Signalling NetworkC5orf17
Wikipedia pathwaysC5orf17
Orthology - Evolution
OrthoDB439936
Phylogenetic Trees/Animal Genes : TreeFamC5orf17
HOVERGENQ8NAS9
HOGENOMQ8NAS9
Homologs : HomoloGeneC5orf17
Homology/Alignments : Family Browser (UCSC)C5orf17
Gene fusions - Rearrangements
Fusion: Tumor Portal C5orf17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf17
dbVarC5orf17
ClinVarC5orf17
1000_GenomesC5orf17 
Exome Variant ServerC5orf17
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP439936
Genomic Variants (DGV)C5orf17 [DGVbeta]
DECIPHERC5orf17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf17 
Mutations
ICGC Data PortalC5orf17 
TCGA Data PortalC5orf17 
Broad Tumor PortalC5orf17
OASIS PortalC5orf17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf17
DgiDB (Drug Gene Interaction Database)C5orf17
DoCM (Curated mutations)C5orf17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf17 (select a term)
intoGenC5orf17
Cancer3DC5orf17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf17
Genetic Testing Registry C5orf17
NextProtQ8NAS9 [Medical]
TSGene439936
GENETestsC5orf17
Target ValidationC5orf17
Huge Navigator C5orf17 [HugePedia]
snp3D : Map Gene to Disease439936
BioCentury BCIQC5orf17
ClinGenC5orf17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439936
Chemical/Pharm GKB GenePA134947037
Clinical trialC5orf17
Miscellaneous
canSAR (ICR)C5orf17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf17
EVEXC5orf17
GoPubMedC5orf17
iHOPC5orf17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:36 CET 2017

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