Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C5orf22 (chromosome 5 open reading frame 22)

Identity

Alias_symbol (synonym)FLJ11193
Other alias-
HGNC (Hugo) C5orf22
LocusID (NCBI) 55322
Atlas_Id 61210
Location 5p13.3  [Link to chromosome band 5p13]
Location_base_pair Starts at 31532266 and ends at 31555058 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf22   25639
Cards
Entrez_Gene (NCBI)C5orf22  55322  chromosome 5 open reading frame 22
Aliases
GeneCards (Weizmann)C5orf22
Ensembl hg19 (Hinxton)ENSG00000082213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000082213 [Gene_View]  chr5:31532266-31555058 [Contig_View]  C5orf22 [Vega]
ICGC DataPortalENSG00000082213
TCGA cBioPortalC5orf22
AceView (NCBI)C5orf22
Genatlas (Paris)C5orf22
WikiGenes55322
SOURCE (Princeton)C5orf22
Genetics Home Reference (NIH)C5orf22
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf22  -     chr5:31532266-31555058 +  5p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf22  -     5p13.3   [Description]    (hg19-Feb_2009)
EnsemblC5orf22 - 5p13.3 [CytoView hg19]  C5orf22 - 5p13.3 [CytoView hg38]
Mapping of homologs : NCBIC5orf22 [Mapview hg19]  C5orf22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF038176 AF085882 AI300780 AK002055 AK074385
RefSeq transcript (Entrez)NM_018356
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf22
Cluster EST : UnigeneHs.519246 [ NCBI ]
CGAP (NCI)Hs.519246
Alternative Splicing GalleryENSG00000082213
Gene ExpressionC5orf22 [ NCBI-GEO ]   C5orf22 [ EBI - ARRAY_EXPRESS ]   C5orf22 [ SEEK ]   C5orf22 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55322
GTEX Portal (Tissue expression)C5orf22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AR2
Splice isoforms : SwissVarQ49AR2
PhosPhoSitePlusQ49AR2
Domains : Interpro (EBI)UPF0489   
Domain families : Pfam (Sanger)UPF0489 (PF12640)   
Domain families : Pfam (NCBI)pfam12640   
Conserved Domain (NCBI)C5orf22
DMDM Disease mutations55322
Blocks (Seattle)C5orf22
SuperfamilyQ49AR2
Human Protein AtlasENSG00000082213
Peptide AtlasQ49AR2
HPRD07740
IPIIPI00019966   IPI00867737   IPI00168444   IPI01014867   IPI00910695   IPI00974562   IPI00974269   
Protein Interaction databases
DIP (DOE-UCLA)Q49AR2
IntAct (EBI)Q49AR2
FunCoupENSG00000082213
BioGRIDC5orf22
STRING (EMBL)C5orf22
ZODIACC5orf22
Ontologies - Pathways
QuickGOQ49AR2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC5orf22
Atlas of Cancer Signalling NetworkC5orf22
Wikipedia pathwaysC5orf22
Orthology - Evolution
OrthoDB55322
GeneTree (enSembl)ENSG00000082213
Phylogenetic Trees/Animal Genes : TreeFamC5orf22
HOVERGENQ49AR2
HOGENOMQ49AR2
Homologs : HomoloGeneC5orf22
Homology/Alignments : Family Browser (UCSC)C5orf22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf22
dbVarC5orf22
ClinVarC5orf22
1000_GenomesC5orf22 
Exome Variant ServerC5orf22
ExAC (Exome Aggregation Consortium)C5orf22 (select the gene name)
Genetic variants : HAPMAP55322
Genomic Variants (DGV)C5orf22 [DGVbeta]
DECIPHERC5orf22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf22 
Mutations
ICGC Data PortalC5orf22 
TCGA Data PortalC5orf22 
Broad Tumor PortalC5orf22
OASIS PortalC5orf22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf22
DgiDB (Drug Gene Interaction Database)C5orf22
DoCM (Curated mutations)C5orf22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf22 (select a term)
intoGenC5orf22
Cancer3DC5orf22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC5orf22
Genetic Testing Registry C5orf22
NextProtQ49AR2 [Medical]
TSGene55322
GENETestsC5orf22
Target ValidationC5orf22
Huge Navigator C5orf22 [HugePedia]
snp3D : Map Gene to Disease55322
BioCentury BCIQC5orf22
ClinGenC5orf22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55322
Chemical/Pharm GKB GenePA144596503
Clinical trialC5orf22
Miscellaneous
canSAR (ICR)C5orf22 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf22
EVEXC5orf22
GoPubMedC5orf22
iHOPC5orf22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:11:05 CEST 2017

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