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C5orf24 (chromosome 5 open reading frame 24)

Identity

Alias_symbol (synonym)FLJ37562
Other alias-
HGNC (Hugo) C5orf24
LocusID (NCBI) 134553
Atlas_Id 61211
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134845968 and ends at 134859735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5orf24 (5q31.1) / LIMA1 (12q13.12)C5orf24 (5q31.1) / TBC1D20 (20p13)DDX46 (5q31.1) / C5orf24 (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C5orf24   26746
Cards
Entrez_Gene (NCBI)C5orf24  134553  chromosome 5 open reading frame 24
Aliases
GeneCards (Weizmann)C5orf24
Ensembl hg19 (Hinxton)ENSG00000181904 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181904 [Gene_View]  chr5:134845968-134859735 [Contig_View]  C5orf24 [Vega]
ICGC DataPortalENSG00000181904
TCGA cBioPortalC5orf24
AceView (NCBI)C5orf24
Genatlas (Paris)C5orf24
WikiGenes134553
SOURCE (Princeton)C5orf24
Genetics Home Reference (NIH)C5orf24
Genomic and cartography
GoldenPath hg38 (UCSC)C5orf24  -     chr5:134845968-134859735 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C5orf24  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblC5orf24 - 5q31.1 [CytoView hg19]  C5orf24 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIC5orf24 [Mapview hg19]  C5orf24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085880 AJ437658 AK094881 AK130086 AV707506
RefSeq transcript (Entrez)NM_001135586 NM_001300894 NM_152409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C5orf24
Cluster EST : UnigeneHs.708536 [ NCBI ]
CGAP (NCI)Hs.708536
Alternative Splicing GalleryENSG00000181904
Gene ExpressionC5orf24 [ NCBI-GEO ]   C5orf24 [ EBI - ARRAY_EXPRESS ]   C5orf24 [ SEEK ]   C5orf24 [ MEM ]
Gene Expression Viewer (FireBrowse)C5orf24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134553
GTEX Portal (Tissue expression)C5orf24
Human Protein AtlasENSG00000181904-C5orf24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6I8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6I8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6I8
Splice isoforms : SwissVarQ7Z6I8
PhosPhoSitePlusQ7Z6I8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C5orf24
DMDM Disease mutations134553
Blocks (Seattle)C5orf24
SuperfamilyQ7Z6I8
Human Protein Atlas [tissue]ENSG00000181904-C5orf24 [tissue]
Peptide AtlasQ7Z6I8
HPRD08226
IPIIPI00396126   IPI00854802   IPI00966340   IPI00966017   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6I8
IntAct (EBI)Q7Z6I8
FunCoupENSG00000181904
BioGRIDC5orf24
STRING (EMBL)C5orf24
ZODIACC5orf24
Ontologies - Pathways
QuickGOQ7Z6I8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC5orf24
Atlas of Cancer Signalling NetworkC5orf24
Wikipedia pathwaysC5orf24
Orthology - Evolution
OrthoDB134553
GeneTree (enSembl)ENSG00000181904
Phylogenetic Trees/Animal Genes : TreeFamC5orf24
HOVERGENQ7Z6I8
HOGENOMQ7Z6I8
Homologs : HomoloGeneC5orf24
Homology/Alignments : Family Browser (UCSC)C5orf24
Gene fusions - Rearrangements
Tumor Fusion PortalC5orf24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC5orf24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C5orf24
dbVarC5orf24
ClinVarC5orf24
1000_GenomesC5orf24 
Exome Variant ServerC5orf24
ExAC (Exome Aggregation Consortium)ENSG00000181904
GNOMAD BrowserENSG00000181904
Genetic variants : HAPMAP134553
Genomic Variants (DGV)C5orf24 [DGVbeta]
DECIPHERC5orf24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC5orf24 
Mutations
ICGC Data PortalC5orf24 
TCGA Data PortalC5orf24 
Broad Tumor PortalC5orf24
OASIS PortalC5orf24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC5orf24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC5orf24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C5orf24
DgiDB (Drug Gene Interaction Database)C5orf24
DoCM (Curated mutations)C5orf24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C5orf24 (select a term)
intoGenC5orf24
Cancer3DC5orf24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC5orf24
MedgenC5orf24
Genetic Testing Registry C5orf24
NextProtQ7Z6I8 [Medical]
TSGene134553
GENETestsC5orf24
Target ValidationC5orf24
Huge Navigator C5orf24 [HugePedia]
snp3D : Map Gene to Disease134553
BioCentury BCIQC5orf24
ClinGenC5orf24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134553
Chemical/Pharm GKB GenePA144596505
Clinical trialC5orf24
Miscellaneous
canSAR (ICR)C5orf24 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC5orf24
EVEXC5orf24
GoPubMedC5orf24
iHOPC5orf24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:26 CET 2017

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